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Mapsembler

Processes large datasets of reads on commodity hardware. Mapsembler checks the presence of a known piece of information with a bounded number of substitutions in a set of reads. It provides pieces of information about the starter context(s), neighborhoods of approximate occurrences of a starter on some hundreds or thousands of nucleotides. The tool provides features like sub-starters retrieval, iterative extensions and graph visualization.

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Mapsembler versioning

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Mapsembler classification

Mapsembler specifications

Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, FASTQ, GZIPPED
License:
CeCILL version 2.1, GNU Affero General Public License version 3
Version:
2_2.2.4
Video URL:
http://www.youtube.com/watch?v=136mr5TOPCw
Interface:
Command line interface, Graphical user interface
Input data:
Some NGS raw read sets.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

Mapsembler support

Maintainer

  • Pierre Peterlongo < >

Credits

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Publications

Institution(s)

INRIA Rennes – Bretagne Atlantique, EPI Symbiose, Rennes, France; ENS Cachan/IRISA, EPI Symbiose, Rennes, France

Funding source(s)

Supported by the INRIA “action de recherche collaborative” ARC Alcovna and by the MAPPI ANR.

Link to literature

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