MapView pipeline

MapView specifications


Unique identifier OMICS_00888
Name MapView
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability No
Maintained No


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Publication for MapView

MapView IN pipelines

PMCID: 5759835
PMID: 29316879
DOI: 10.1186/s12864-017-4365-3

[…] viewer of the bovine genome umd3.1.1 was used for identification of genes in roh regions, available at “national center for biotechnology information” (ncbi map viewer - database for annotation, visualization, and integrated discovery (david) v6.8 tool [26, 27] was used to identify significant (p ≤ 0.05) gene ontology (go) terms and kegg (kyoto […]

PMCID: 5791963
PMID: 29385200
DOI: 10.1371/journal.pone.0191205

[…] all identified genes were compared to those reported previously [18,22]. newly identified genes were confirmed using blast search of dog genomic sequences (available at, [33]) and/or dog blat search (available at, [34]), using the canfam3.1 assembly (genbank assembly id gca_000002285.2)., for cll cases, genomic dna was extracted from 200 μl […]

PMCID: 4467842
PMID: 26076481
DOI: 10.1371/journal.pone.0130188

[…] (retnl, e.g., retnlb) coding and genomic sequences were identified in genomic databases maintained by the national center for biotechnology information (ncbi, and ensembl ( and in december 2014, using approaches we have used in previous studies [25,26,27]. initial sequences were identified through searches […]

PMCID: 3930007
PMID: 24548287
DOI: 10.1186/1471-2164-15-137

[…] (its pre-mirna sequence represents the entire length of an intron) [38]. mirna genomic location was searched in the cow genome assembly umd3.1 using the ncbi map viewer ( and ensemble genome browser ( core adipose mirnas were classified according to their conservation status as highly conserved, conserved or poorly […]

PMCID: 4049697
PMID: 24911169
DOI: 10.1371/journal.pone.0098911

[…] of brown planthopper genes were identified by searching the appropriate chromosomal locations in the selected reference genomes using the ncbi map viewer (, qtl analysis was performed using the mapqtl 6.0 software package [48]. the selected virulence traits were host preference and growth rate. the host preference of the f1 population […]

MapView institution(s)
State Key Laboratory of Biocontrol and Key Laboratory of Gene Engineering of Ministry of Education, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China; School of Manufacturing Science and Engineering, Sichuan University, Chengdu, China
MapView funding source(s)
Supported by National Basic Research Program of China (2007CB815701); National Natural Science Foundation of China (30730008, 30800060, 30600064 and 40876075).

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