MapView pipeline

MapView specifications

Information


Unique identifier OMICS_00888
Name MapView
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability No
Maintained No

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Publication for MapView

MapView IN pipelines

 (13)
2018
PMCID: 5759835
PMID: 29316879
DOI: 10.1186/s12864-017-4365-3

[…] viewer of the bovine genome umd3.1.1 was used for identification of genes in roh regions, available at “national center for biotechnology information” (ncbi map viewer - https://www.ncbi.nlm.nih.gov/mapview/). database for annotation, visualization, and integrated discovery (david) v6.8 tool [26, 27] was used to identify significant (p ≤ 0.05) gene ontology (go) terms and kegg (kyoto […]

2018
PMCID: 5791963
PMID: 29385200
DOI: 10.1371/journal.pone.0191205

[…] all identified genes were compared to those reported previously [18,22]. newly identified genes were confirmed using blast search of dog genomic sequences (available at ncbi.nlm.nih.gov/projects/mapview, [33]) and/or dog blat search (available at genome.ucsc.edu, [34]), using the canfam3.1 assembly (genbank assembly id gca_000002285.2)., for cll cases, genomic dna was extracted from 200 μl […]

2015
PMCID: 4467842
PMID: 26076481
DOI: 10.1371/journal.pone.0130188

[…] (retnl, e.g., retnlb) coding and genomic sequences were identified in genomic databases maintained by the national center for biotechnology information (ncbi, www.ncbi.nlm.nih.gov/projects/mapview/) and ensembl (www.ensembl.org and www.pre.ensembl.org) in december 2014, using approaches we have used in previous studies [25,26,27]. initial sequences were identified through searches […]

2014
PMCID: 3930007
PMID: 24548287
DOI: 10.1186/1471-2164-15-137

[…] (its pre-mirna sequence represents the entire length of an intron) [38]. mirna genomic location was searched in the cow genome assembly umd3.1 using the ncbi map viewer (http://www.ncbi.nlm.nih.gov/mapview/) and ensemble genome browser (http://uswest.ensembl.org/index.html). core adipose mirnas were classified according to their conservation status as highly conserved, conserved or poorly […]

2014
PMCID: 4049697
PMID: 24911169
DOI: 10.1371/journal.pone.0098911

[…] of brown planthopper genes were identified by searching the appropriate chromosomal locations in the selected reference genomes using the ncbi map viewer (http://www.ncbi.nlm.nih.gov/projects/mapview)., qtl analysis was performed using the mapqtl 6.0 software package [48]. the selected virulence traits were host preference and growth rate. the host preference of the f1 population […]

MapView institution(s)
State Key Laboratory of Biocontrol and Key Laboratory of Gene Engineering of Ministry of Education, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China; School of Manufacturing Science and Engineering, Sichuan University, Chengdu, China
MapView funding source(s)
Supported by National Basic Research Program of China (2007CB815701); National Natural Science Foundation of China (30730008, 30800060, 30600064 and 40876075).

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