MaqView specifications


Unique identifier OMICS_00889
Name MaqView
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License GNU General Public License version 3.0
Computer skills Medium
Version 0.1.0
Stability Stable
Maintained Yes




No version available


  • person_outline Mengyao Zhao

MaqView citations


Targeted Re Sequencing Identified rs3106189 at the 5′ UTR of TAPBP and rs1052918 at the 3′ UTR of TCF3 to Be Associated with the Overall Survival of Colorectal Cancer Patients

PLoS One
PMCID: 3734069
PMID: 23940558
DOI: 10.1371/journal.pone.0070307

[…] a long reference sequence allowing mismatches, thus detecting SNPs .SNPs were identified by SAMtools (version 0.1.6), which migrated and improved various downstream data processing implemented in Maq/Maqview such as indexing, pileup, viewer and consensus caller. SAMtools generated the consensus sequence with the statistical model implemented in MAQ , . Potential PCR duplicates were first removed b […]


High throughput sequencing reveals suppressors of Vibrio cholerae rpoE mutations: one fewer porin is enough

Nucleic Acids Res
PMCID: 2761261
PMID: 19620211
DOI: 10.1093/nar/gkp568

[…] respond to differences between our strain and the published sequence) or had relatively low consensus quality scores. Based on visual inspection of sequence alignments (using MAQ’s companion program, MAQview) as well as Sanger sequencing of some candidate loci, we determined that candidate SNPs with consensus quality scores of less than 50 were likely to be false. Removing these loci from the list […]

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