MARCOIL pipeline

MARCOIL specifications

Information


Unique identifier OMICS_09324
Name MARCOIL
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Output data HMM based on MTIDK and other matrices
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Mauro Delorenzi <>

Information


Unique identifier OMICS_09324
Name MARCOIL
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Output data HMM based on MTIDK and other matrices
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Mauro Delorenzi <>

Publication for MARCOIL

MARCOIL IN pipeline

2010
PMCID: 2875224
PMID: 20459678
DOI: 10.1186/1745-6150-5-33

[…] the signature gtp-binding loop containing the gggtg(s/t)g motif [8,12]. the central portion of the huta_2051 protein (445-781 aa) consists of an extended coiled-coil as predicted using the marcoil program [13], followed by a mostly α-helical globular domain according to the secondary structure prediction made using the psipred program [14]., we performed an exhaustive psi-blast search […]

MARCOIL institution(s)
Genetics and Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria, Australia

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