Marker2sequence specifications

Information


Unique identifier OMICS_13757
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Genomic region using the format Chr:start..stop, two markers flanking the QTL region or a list of markers spanning the QTL region
Output data The alignment of the reference genetic map with the genomic information, a list of all genes in the specified region, their location and description, the markers within this region, the genetic map for the specified region
Output format PDF
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Plants

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Versioning


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Maintainer


  • person_outline Richard Finkers <>

Marker2sequence article

Marker2sequence institution(s)
Wageningen UR Plant Breeding, Wageningen University and Research Centre, Wageningen, Netherlands; Graduate School Experimental Plant Science, Wageningen, Netherlands; Centre for Biosystems Genomics, Wageningen, Netherlands; Crop Bioinformatics, INRES, University of Bonn, Bonn, Germany
Marker2sequence funding source(s)
This project was co-financed by the sixth framework EU project ‘High Quality Solanaceous crops for consumers, processors and producers by exploration of Biodiversity’, contract number: FOOD-CT-2006-016214, Wageningen UR Plant Breeding and the Centre for BioSystems Genomics (CBSG) which is part of the Netherlands Genomics Initiative/Netherlands Organization for Scientific Research.

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