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- Software type:
- Restrictions to use:
- Output data:
- The alignment of the reference genetic map with the genomic information, a list of all genes in the specified region, their location and description, the markers within this region, the genetic map for the specified region
- Programming languages:
- Computer skills:
- Command line interface
- Input data:
- Genomic region using the format Chr:start..stop, two markers flanking the QTL region or a list of markers spanning the QTL region
- Output format:
- Apache License version 2.0
- Source code URL:
(Chibon et al., 2012) Marker2sequence, mine your QTL regions for candidate genes. Bioinformatics.
- Richard Finkers <richard.finkers at wur.nl>
Wageningen UR Plant Breeding, Wageningen University and Research Centre, Wageningen, The Netherlands; Graduate School Experimental Plant Science, Wageningen, The Netherlands; Centre for Biosystems Genomics, Wageningen, The Netherlands; Crop Bioinformatics, INRES, University of Bonn, Bonn, Germany
This project was co-financed by the sixth framework EU project ‘High Quality Solanaceous crops for consumers, processors and producers by exploration of Biodiversity’, contract number: FOOD-CT-2006-016214, Wageningen UR Plant Breeding and the Centre for BioSystems Genomics (CBSG) which is part of the Netherlands Genomics Initiative/Netherlands Organization for Scientific Research.
Link to literature
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