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Markyt specifications

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Unique identifier OMICS_13809
Name Markyt
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input format TXT, HTML, XML
Output format HTML, TSV, BioC Format
Operating system Unix/Linux, Mac OS, Windows
Programming languages PHP
Computer skills Medium
Version 2.3.0
Stability Stable
Maintained Yes

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Publication for Markyt

Markyt citations

 (2)
library_books

Collaborative relation annotation and quality analysis in Markyt environment

2017
PMCID: 5737204
PMID: 29220479
DOI: 10.1093/database/bax090

[…] details: pérez-pérez,m., pérez-rodríguez,g., fdez-riverola,f. et al. collaborative relation annotation and quality analysis in markyt environment. database (2017) vol. 2017: article id bax090; doi:10.1093/database/bax090, text mining is showing potential to help in biomedical knowledge integration and discovery at various […]

library_books

Chemical entity recognition in patents by combining dictionary based and statistical approaches

2016
PMCID: 4852402
PMID: 27141091
DOI: 10.1093/database/baw061

[…] recall = tp/(tp + fn), precision = tp/(tp + fp), f-score = 2*precision*recall/(precision + recall), specificity = tn/(tn + fp) and accuracy =  (tp + tn)/(tp + fn + fp + tn). we also used the markyt prediction analysis toolkit (www.markyt.org/biocreative/analysis) to visualize the results. table 1., we used peregrine, our open-source indexer (), to analyze the performance of the different […]


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Markyt institution(s)
ESEI, Department of Computer Science, University of Vigo, Ourense, Spain; Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain; Structural Computational Biology Group, Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre, Madrid, Spain; ESEI, Department of Computer Science, University of Vigo, Ourense, Spain; Small Molecule Discovery Platform, Molecular Therapeutics Program, Center for Applied Medical Research (CIMA), University of Navarra, Pamplona, Spain
Markyt funding source(s)
This work was partially funded by the Contract-Programme from the University of Vigo and the Agrupamento INBIOMED from DXPCTSUG-FEDER unha maneira de facer Europa (2012/273) as well as by the Foundation for Applied Medical Research, University of Navarra (Pamplona, Spain). The research leading to these results has received funding from the European Union's Seventh Framework Programme FP7/REGPOT-2012-2013.1 under grant agreement n° 316265, BIOCAPS.

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