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A combined database and R package that allows you to investigate the methylation state of regions of interest across the genome. Marmal-aid is the largest publicly available Illumina HumanMethylation450 methylation database combining Illumina HumanMethylation450 data from a number of sources into a single location with a single common annotation format. This allows for automated extraction using the R package and inclusion into existing analysis pipelines. Marmal-aid also provides a easy to use GUI to visualise methylation data in user defined genomic regions for various reference tissues.

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Marmal-aid forum

No open topic.

Marmal-aid versioning

No versioning.

Marmal-aid classification

Marmal-aid specifications

Software type:
Framework
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Stability:
Stable

User report

0 user reviews

0 user reviews

No review has been posted.

Marmal-aid forum

No open topic.

Marmal-aid classification

Marmal-aid specifications

Software type:
Framework
Restrictions to use:
None
Programming languages:
R
Computer skills:
Basic
Interface:
Web user interface
Biological technology:
Illumina
Database support:
Yes
Stability:
Stable

Publications

  • (Lowe and Rakyan, 2013) Marmal-aid--a database for Infinium HumanMethylation450. BMC bioinformatics.
    Published on: 2013 Dec 01
    PMID: 24330312

Marmal-aid support

Maintainer

Credits

Institution(s)

The Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK

Link to literature

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