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MARQ specifications

Information


Unique identifier OMICS_05463
Name MARQ
Alternative name MicroArray Rank Query
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Pedro Carmo-Saez

Publication for MicroArray Rank Query

MARQ citations

 (3)
library_books

A novel connection between the Cell Wall Integrity and the PKA pathways regulates cell wall stress response in yeast

2017
Sci Rep
PMCID: 5515849
PMID: 28720901
DOI: 10.1038/s41598-017-06001-9

[…] criptional profiles of yeast cells treated with CAS have been previously reported, . Here, comparison of the transcriptional profiles of the wild-type strain and the slt2∆ mutant, in combination with MARQ data-mining, have allowed us uncover a novel regulatory mechanism associated to PKA inhibition not previously described.In terms of the PKA-related transcriptional response caused by CAS treatmen […]

library_books

Transcriptional data: a new gateway to drug repositioning?

2013
Drug Discov Today
PMCID: 3625109
PMID: 22897878
DOI: 10.1016/j.drudis.2012.07.014

[…] ata repositories based on similarity with an input signature in a similar manner to cMap. ProfileChaser searches microarray repositories based on genome-wide patterns of differential expression, and MARQ mines GEO for experiments that generate a differential expression profile that is similar or anti-correlated to an input gene expression signature. Finally, DvD is a recently developed tool prov […]

library_books

Discovering biological connections between experimental conditions based on common patterns of differential gene expression

2011
BMC Bioinformatics
PMCID: 3203354
PMID: 21951600
DOI: 10.1186/1471-2105-12-381

[…] compare openSESAME with two other methods that relate gene expression differences in GEO-deposited data to a query signature. One of the key differences between openSESAME and both GeneChaser [] and MARQ [] is that, unlike openSESAME, these methods precompute the degree of differential expression associated with phenotypic comparisons gleaned from sample annotation information that has been depos […]

Citations

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MARQ institution(s)
Software Engineering Department, Facultad de Informatica, Universidad Complutense de Madrid, Madrid, Spain

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