MARRAY statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

MARRAY specifications

Information


Unique identifier OMICS_26828
Name MARRAY
Alternative name Mouse prostate ARRAY expression information
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Rodents
    • Mus musculus

MARRAY citations

 (45)
library_books

Integrated Molecular Meta Analysis of 1,000 Pediatric High Grade and Diffuse Intrinsic Pontine Glioma

2017
Cancer Cell
PMCID: 5637314
PMID: 28966033
DOI: 10.1016/j.ccell.2017.08.017

[…] SNP arrays (Affymetrix 500k and SNP6.0), 450k methylation arrays (Illumina) and/or sequencing data (whole genome and exome). Two color aCGH data was read and normalized using the R packages limma and marray. Log intensity data from Affymetrix SNP arrays was derived using the aroma.affymetrix and aroma.cn package. Combined log2 intensity data from Illumina 450K methylation arrays was processed usin […]

library_books

Transcriptome profiling of antiviral immune and dietary fatty acid dependent responses of Atlantic salmon macrophage like cells

2017
BMC Genomics
PMCID: 5591513
PMID: 28886690
DOI: 10.1186/s12864-017-4099-2

[…] scence signal. The raw data were saved as TIFF images, and the signal intensity data were extracted using Imagene 9.0 (BioDiscovery, El Segundo, California, USA). Using R and the Bioconductor package marray, the low-quality or flagged spots on the microarray were discarded from datasets, followed by log2-transformation and Loess-normalization of data []. Thereafter, probes with absent values in mo […]

library_books

Activating transcription factor 3 is crucial for antitumor activity and to strengthen the antiviral properties of Onconase

2016
Oncotarget
PMCID: 5355296
PMID: 28035074
DOI: 10.18632/oncotarget.14302

[…] nologies, USA). Data were extracted from the resulting TIFF-images using the Feature Extraction software v. 10.7 (Agilent Technologies, USA). Raw microarray data were statistically analyzed using the Marray, pcaMethods, Limma, and RankProd software packages from Bioconductor (www.bioconductor.org), which uses the R statistical environment and programming language. In particular, the non-specific s […]

library_books

De novo HAPLN1 expression hallmarks Wnt induced stem cell and fibrogenic networks leading to aggressive human hepatocellular carcinomas

2016
Oncotarget
PMCID: 5129911
PMID: 27191501
DOI: 10.18632/oncotarget.9346

[…] ent data were constructed with Excel (Microsoft Office 2010). Statistical calculations were performed with the R software (version 3.1.1) and the packages survival, FactoMineR, gplots, colorspace and marray or with Statistica 10 (Statsoft, Maisons-Alfort, France).See for: RNA interference, nucleic acid extraction from human tissues and cells, real-time PCR and immunocytochemistry. See for real-t […]

library_books

A nuclear directed human pancreatic ribonuclease (PE5) targets the metabolic phenotype of cancer cells

2016
Oncotarget
PMCID: 4951290
PMID: 26918450
DOI: 10.18632/oncotarget.7579

[…] ta were extracted from the resulting TIFF-images using the Feature Extraction software v. 10.7 (Agilent Technologies, USA). Raw microarray data were statistically analysed using the software packages Marray, pcaMethods, Limma, and RankProd from Bioconductor (www.bioconductor.org), which uses the R statistical environment and programming language. In particular, the non-specific signal was removed […]

library_books

Relationships between putative G quadruplex forming sequences, RecQ helicases, and transcription

2015
BMC Med Genet
PMCID: 4599794
PMID: 26449372
DOI: 10.1186/s12881-015-0236-4

[…] dard procedures. Datasets were downloaded from the GEO repository and processed in R using microarray analysis packages available from Bioconductor. Packages included hgu95av2cdf, hgu95av2.db, limma, marray, affy, affyQCReport, and affyPLM. WS datasets were normalized using the robust multiple-array average (RMA) algorithm, and genes differentially-expressed in WS patient samples were identified w […]

Citations

Looking to check out a full list of citations?

MARRAY reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MARRAY