MarRef specifications

Information


Unique identifier OMICS_23282
Name MarRef
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Nils Willassen

Additional information


https://mmp.sfb.uit.no/help/#the-marine-reference-databases https://s1.sfb.uit.no/public/mar/MarRef/

Publication for MarRef

MarRef citation

library_books

ELIXIR pilot action: Marine metagenomics – towards a domain specific set of sustainable services

2017
F1000Res
PMCID: 5461914
PMID: 28620454
DOI: 10.5256/f1000research.11253.r19670

[…] blies with or without filtering, MetaQUAST v3.2 was used . For the two sediment samples, MetaQUAST was run in the reference-based evaluation mode with an in-house generated marine reference database, MarRef, as reference genomes. MarRef consists of 337 manually curated complete prokaryotic genomes (unpublished, curated by Terje Klemetsen), with a total length of 1135 Mb ( ). For the two faecal met […]

MarRef institution(s)
Centre for Bioinformatics, Faculty of science and technology, UiT The Arctic University of Norway, Tromso, Norway; Department of Information Technology, UiT The Arctic University of Norway, Tromso, Norway
MarRef funding source(s)
Supported by ELIXIR EXCELERATE funded by the European Commission within the Research Infrastructures programme of Horizon 2020 [676559]; Research Council of Norway [208481]; UiT The Arctic University of Norway.

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