MarVis-Suite statistics

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Popular tool citations

chevron_left Metabolic network analysis Data normalization Data integration Clustering chevron_right
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MarVis-Suite specifications

Information


Unique identifier OMICS_09699
Name MarVis-Suite
Alternative name Marker Visualization
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Version 2.0
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Alexander Kaever <>

Publications for Marker Visualization

MarVis-Suite in pipeline

2017
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] the development and integration of different tools. it includes many other tools previously described here like mzmatchiso and metassign, and it is based entirely in the peakml file format. the marker visualization suite (marvis-suite) [] is a software for the interactive ranking, filtering, combination, clustering, visualization, and functional analysis of transcriptomics and metabolomics […]


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MarVis-Suite in publications

 (10)
PMCID: 5543063
PMID: 28775382
DOI: 10.1038/s41598-017-07838-w

[…] to 1 – pearson coefficient) and average linkage method. clustering and visualization of normalized gene expression profiles based on one-dimensional self-organizing maps were performed using the marvis-suite software and default settings. the lists of regulated genes were functionally analysed using the david (database for annotation, visualization, and integrated discovery; […]

PMCID: 5611982
PMID: 28768895
DOI: 10.18632/aging.101268

[…] on a cryotome cm1900 (leica biosystems; wetzlar, germany). saβg-stained sections were counterstained with nuclear fast red, dehydrated, cleared in xylene and mounted with dpx. for f4/80 macrophage marker visualization, sections were fixed with 4% formaldehyde in pbs for 5 minutes at room temperature and washed three times with pbs. sections were incubated with blocking solution 15 minutes […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] the development and integration of different tools. it includes many other tools previously described here like mzmatchiso and metassign, and it is based entirely in the peakml file format. the marker visualization suite (marvis-suite) [] is a software for the interactive ranking, filtering, combination, clustering, visualization, and functional analysis of transcriptomics and metabolomics […]

PMCID: 5094077
PMID: 27809923
DOI: 10.1186/s13075-016-1155-2

[…] runs during which the subject became accustomed to the required timing, motion capture commenced. again, between ten and 15 dynamic trials were recorded., data quality was contingent upon adequate marker visualization to allow reconstruction of relatively uninterrupted three-dimensional marker trajectories. three control and three fes trials were taken for analysis from the lattermost recorded […]

PMCID: 4828442
PMID: 27148319
DOI: 10.3389/fpls.2016.00495

[…] the .cdf data were processed with r for statistical computing using the xcms package for relative quantification (). for the heat map construction, clustering of metabolite and analysis of results marvis suite was used (). to determine the global behavior of the signals, principal component analyses (pca) plots were generated using the multibase 2015 algorithm in order to identify metabolites, […]


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MarVis-Suite institution(s)
Department of Bioinformatics, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Göttingen, Germany; Department of Developmental Biochemistry, Institute for Biochemistry and Molecular Cell Biology, Georg-August-University Göttingen, Göttingen, Germany; Department for Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, Georg-August-University Göttingen, Göttingen, Germany
MarVis-Suite funding source(s)
Supported by the German Federal Ministry of Education and Research (BioFung 0315595A) and the German Research Foundation (FL3 INST186/822-1, He3424/2).

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