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Protocols

MASA specifications

Information


Unique identifier OMICS_10727
Name MASA
Alternative name Methylation site based on the Accessible Surface Area
Interface Web user interface
Restrictions to use None
Input data Protein sequence
Input format FASTA
Computer skills Basic
Version 1.0
Stability No
Maintained Yes

Maintainer


  • person_outline Hsien-Da Huang

Publication for Methylation site based on the Accessible Surface Area

MASA citations

 (13)
library_books

KSHV encoded ORF59 modulates histone arginine methylation of the viral genome to promote viral reactivation

2017
PLoS Pathog
PMCID: 5513536
PMID: 28678843
DOI: 10.1371/journal.ppat.1006482

[…] em to alter specific functionality. This begged the obvious question of whether ORF59 is arginine-methylated by associating with PRMT5. To investigate this, we used a methylation prediction software, MASA (Methylation site based on the Accessible Surface Area) available at http://masa.mbc.nctu.edu.tw/predict.php [], which found that only a single arginine, R384 could potentially be methylated (Fig […]

library_books

Protein post translational modifications: In silico prediction tools and molecular modeling

2017
Comput Struct Biotechnol J
PMCID: 5397102
PMID: 28458782
DOI: 10.1016/j.csbj.2017.03.004

[…] ce-based analysis of training data sets, some of them have also started to take into account other interesting properties, such as evolutionary information (e.g., PhosphoOrtholog, iUbiq), SASA (e.g., MASA, METhK, SUMOAMVR) and physiochemical properties (e.g., Pmes, SUMOhydro).Altogether, these approaches are only rarely considering the molecular features associated with PTMs and the molecular impa […]

library_books

Equity trends in ownership of insecticide treated nets in 19 sub Saharan African countries

2017
Bull World Health Organ
PMCID: 5418821
PMID: 28479633
DOI: 10.2471/BLT.16.172924

[…] Las campañas de distribución en masa de ITN para aumentar la cobertura (vinculadas al lanzamiento de la iniciativa Cover the bed net gap) han conllevado una mejora en la cobertura de propiedad de ITN en toda el África subsahariana, […]

library_books

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S sulfenylation sites

2016
BMC Genomics
PMCID: 4895302
PMID: 26819243
DOI: 10.1186/s12864-015-2299-1

[…] erestimation on performance evaluation, homologous sequences in the training and independent testing datasets were removed using 30 % sequence similarity as the filtering threshold, with reference to MASA []. As shown in (Additional file : Figure S1), two S-sulfenylated proteins with more than 30 % sequence identity were defined as homologous protein sequences. Then, two homologous sequences were […]

library_books

Evidence supporting a critical contribution of intrinsically disordered regions to the biochemical behavior of full length human HP1γ

2015
J Mol Model
PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] sphoSVM [], Scansite, Musite [], and PPSP []. Acetylation sites were predicted using PAIL [], ASEB [], BRABSB-PHKA [], LysAcet [], and LAceP []. Methylation sites were predicted using BPB-PPMS [] and MASA []. Ubiquitination sites were predicted using BDM-PUB [], CKSAAP UbSite [], and UbPred []. Sumoylation sites were predicted using GPS-SUMO [] and SUMOplot (http://www.abgent.com/sumoplot/). Resul […]

library_books

Schistosomiasis in school age children in Burkina Faso after a decade of preventive chemotherapy

2015
Bull World Health Organ
PMCID: 4709800
PMID: 26769995
DOI: 10.2471/BLT.15.161885

[…] Evaluar el efecto de una década de administración bienal de praziquantel en masa para la esquistosomiasis en los niños en edad escolar de Burkina Faso. […]

Citations

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MASA institution(s)
Department of Computer Science and Information Engineering, National Central University, Taiwan; Institute of Bioinformatics and Systems Biology, College of Biological Science and Technology, National Chiao Tung University, Taiwan

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