Mascot Server statistics
Protocols
Mascot Server specifications
Information
| Unique identifier | OMICS_02398 |
|---|---|
| Name | Mascot Server |
| Alternative name | Mascot search engine |
| Interface | Web user interface, Application programming interface |
| Restrictions to use | License purchase required |
| Computer skills | Basic |
| Version | 2.6.1 |
| Stability | Stable |
| Maintained | Yes |
Subtool
- Mascot Daemon
Maintainers
- person_outline Gonçalo Abecasis <>
- person_outline Christian Fuchsberger <>
- person_outline Mascot Team <>
Publication for Mascot Server
Probability-based protein identification by searching sequence databases using mass spectrometry data.
Mascot Server citations
(965)Smooth muscle like Ca2+ regulation of actin–myosin interaction in adult jellyfish striated muscle
[…] spectra of the major peptide ions observed were subjected, respectively to peptide mass fingerprinting (pmf) and ms/ms ions search (mis), using the transcrisptome database registered on a local mascot server (version 2.2.07, matrix science). the following parameters were used: allowance of one (trypsin) or no (lysylendopeptidase) missed cleavage; mass tolerance, ±0.4 da; peptide charge, 1+; […]
Helicobacter suis binding to carbohydrates on human and porcine gastric mucins and glycolipids occurs via two modes
[…] of -35 ev, an isolation width of m/z 1.0, an activation q value of 0.250, and a time of 30 ms were used. peptide ms/ms spectra were searched against uniprot and ncbi pig protein databases using mascot server (v.2.2.04, matrix science inc., ma, usa) with in-house build mucin database. the amino acid sequences of the sus scrofa muc5ac and muc5b homologs were previously only partial []. […]
Simulated microgravity induces a cellular regression of the mature phenotype in human primary osteoblasts
[…] dataanalysis 4.0 software (bruker daltonics) was used for data processing. generated mgf files were then merged per lane and used for database search (swissprot, version 20150612) through the mascot daemon application included in an in-house mascot server (version 2.5, matrix science, london, uk) with the following constraints: taxonomy = homo sapiens (20,207 sequences); enzyme = trypsin; […]
HIV 1 tat expression and sulphamethoxazole hydroxylamine mediated oxidative stress alter the disulfide proteome in Jurkat T cells
[…] peptide mass fingerprints (pmf) using the data explorer software (applied biosystems, foster city, ca, usa). protein identification from these pmf was generated using a gps engine connected to a mascot server provided by the software manufacturer. pmf were compared to known peptide mass sequences in the ncbi (national center for biotechnological information) database and samples with a pmf […]
Alterations of proteome, mitochondrial dynamic and autophagy in the hypothalamus during activity based anorexia
[…] (3–80% acetonitrile in 0.1% formic acid). then, the eluent was analyzed with a q-tof or ion trap mass spectrometer., for protein identification, ms/ms peak list were extracted and compared with mascot daemon version 2.2.2 (matrix science, boston, ma) server, using the following parameters: enzyme specificity, trypsin; no restriction on protein molecular weight; one missed cleavage […]
The Rab11 binding protein RELCH/KIAA1468 controls intracellular cholesterol distribution
[…] (thermo fisher scientific) mass spectrometer at osaka university center for medical research and education. the database search was conducted using proteinlynx global server (v.2.4; waters corp.) or mascot server (v.2.3; matrix science) software and the international protein index database (mouse; v.3.77 or 3.87; embl-ebi)., the yeast two-hybrid assay was performed as previously described (). […]
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