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MASH Suite Pro specifications


Unique identifier OMICS_31523
Name MASH Suite Pro
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Stability Stable
Microsoft.NET Framework, Xcalibur
Registration required Yes
Maintained Yes


No version available

Publication for MASH Suite Pro

MASH Suite Pro citations


PP2A B′ holoenzyme substrate recognition, regulation and role in cytokinesis

PMCID: 5586252
PMID: 28884018
DOI: 10.1038/celldisc.2017.27

[…] harge states with 15–30 V d.c. bias. Up to 2000 transients were averaged per spectrum to ensure high-quality ECD/CID spectra. All Fourier transform ion cyclotron resonance spectra were processed with MASH Suite Pro [] with THRASH algorithm, using a signal-to-noise threshold of 3.0 and minimum fit of 60% and validated manually. The resulting monoisotopic mass lists were further searched with MSalig […]


Coupling functionalized cobalt ferrite nanoparticle enrichment with online LC/MS/MS for top down phosphoproteomics† †Electronic supplementary information (ESI) available: Material and methods, characterization of the NPs, and top down MS. See DOI: 10.1039/c6sc05435h Click here for additional data file.

PMCID: 5472028
PMID: 28660060
DOI: 10.1039/c6sc05435h

[…] factor (UniProtKB/Swiss-Prot, F1RHJ2_PIG) using MS-Align+, search algorithm (Fig. S10), which was previously uncharacterized and unreviewed. We further analyzed the data and mapped the sequence using MASH suite Pro. Three potential phosphorylation sites were determined: Ser132, Ser133, and Ser165 (red letters in and S11). Top-down MS/MS not only revealed an N-terminal methionine excision, but als […]


Top Down Proteomics and Farm Animal and Aquatic Sciences

PMCID: 5260971
PMID: 28248248
DOI: 10.3390/proteomes4040038

[…] to assist protein characterization. The user can optionally control how much biological variability should be searched [,]. Other software dedicated to TDP data acquisition and interpretation include MASH Suite Pro ( [] and Autopilot ( [].Sample fractionation prior to MS analysis is an im […]


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MASH Suite Pro institution(s)
Department of Cell and Regenerative Biology, Molecular Pharmacology Training Program, Human Proteomics Program, University of Wisconsin-Madison, Madison, WI, USA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA; Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA
MASH Suite Pro funding source(s)
Supported by NIH R01HL096971 and R01HL109810, and by American Heart Association Scientist Development Grant 0735443Z.

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