MashMap specifications


Unique identifier OMICS_15448
Name MashMap
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data The output is space-delimited with each line consisting of query name, length, 0-based start, end, strand, target name, length, start, end, mapping nucleotide identity, count of shared sketch elements and the sketch size.
Operating system Unix/Linux, Mac OS
Programming languages C++
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes



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  • person_outline Adam Phillippy <>

Publication for MashMap

MashMap institution(s)
Georgia Institute of Technology, Atlanta, GA, USA; National Institutes of Health, Bethesda, MD, USA
MashMap funding source(s)
This research was supported in part by the Intramural Research Program of the National Human Genome Research Institute, National Institutes of Health, and the U.S. National Science Foundation under IIS-1416259.

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