maSigPro protocols

maSigPro specifications


Unique identifier OMICS_01990
Name maSigPro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.48.0
Stability Stable
Requirements stats, Biobase, MASS
Maintained Yes


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Publications for maSigPro

maSigPro IN pipeline

PMCID: 3787675
PMID: 23946331
DOI: 10.1093/gbe/evt123

[…] by ≥1.5-fold as a function of met1 genotype at one or more time points., to identify genes with modest but temporally consistent expression differences between the met1 genotypes, we also used the masigpro package to conduct a stepwise quadratic regression analysis (conesa et al. 2006). we corrected for multiple testing by applying a 0.05 false discovery rate (benjamini and hochberg 1995) […]

maSigPro institution(s)
Mathematics Department, University of Alicante, Spain; Genomics of Gene Expression Laboratory, Centro de Investigaciones Prıncipe Felipe, Valencia, Spain; Statistics and Operational Research Department, Politechnical University of Valencia, Valencia, Spain; Microbiology and Cell Science Department, Institute for Food and Agricultural Research, University of Florida, FL, USA
maSigPro funding source(s)
Supported by the European Union Seventh Framework Programme STATegra project under the grant agreement 306000 and the Spanish MINECO grants BIO2012-40244 and BIO2015-71658-R.

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