Sets a baseline, detects or annotates elution peaks, and calculates peak areas for relative quantification. Byomap is able to align and compare multiple peptide maps to an annotate reference map. Moreover, it computes a summed mass spectrometry (MS) spectrum for each elution peak, and in almost all cases, lists the identification matching the most intense peak in the MS spectrum.
Provides an automated pipeline for functional annotation of given mass spectrometry (MS) results. MassNet is a web-based server that offers various kinds of functional information, such as physico-chemical properties, biological pathways, gene ontology and protein–protein interaction (PPI). It takes data from MASCOT, Prospector and Profound, and uses both 3D structural interaction and experimental interaction to give results.
Allows users to read individual mass spectra and mass chromatograms from data files in netCDF format. Cdfread assists experimented researchers to read mass chromatograms, and uses gnuplot to visualize data.