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Mass cytometry tools

Flow cytometry and mass cytometry software tools

Mass cytometry addresses the analytical challenges of polychromatic flow cytometry by using metal atoms as tags rather than fluorophores and atomic mass spectrometry as the detector rather than photon optics.

Automatic Classification of Cellular Expression…

OMIC_10529

Automatic Classification of Cellular Expression by Nonlinear Stochastic…
ACCENSE

A standalone application for exploratory analysis of high-dimensional single-cell data…

A standalone application for exploratory analysis of high-dimensional single-cell data such as that generated by Mass Cytometry (CyTOFTM, Fluidigm Corp.). The main functions that ACCENSE provides are: (1) It performs a nonlinear dimensionality…

CYT

OMIC_05648

CYT

An interactive visualization tool designed for the analysis of viSNE maps and the…

An interactive visualization tool designed for the analysis of viSNE maps and the high-dimensional mass or flow cytometry data from which these maps were projected.

FlowSOM

OMIC_11053

FlowSOM

Analyzes flow or mass cytometry data using a self-organizing map. Using a two-level…

Analyzes flow or mass cytometry data using a self-organizing map. Using a two-level clustering and star charts, FlowSOM helps to obtain a clear overview of how all markers are behaving on all cells, and to detect subsets that might be missed…

immunoClust

OMIC_08082

immunoClust

An automated analysis pipeline for uncompensated fluorescence and mass cytometry data,…

An automated analysis pipeline for uncompensated fluorescence and mass cytometry data, which consists of two parts. First, cell events of each sample are grouped into individual clusters. Subsequently, a classification algorithm assorts these cell…

viSNE

OMIC_05647

viSNE

A tool that allows one to map high-dimensional cytometry data onto two dimensions, yet…

A tool that allows one to map high-dimensional cytometry data onto two dimensions, yet conserve the high-dimensional structure of the data.