Mass spectrometry software tools

Mass spectrometry applications

Most recent bioinformatics tools

W4M
Web

W4M Workflow4metabolomics

Allows comprehensive metabolomics data pre-processing, statistical analysis and…

Allows comprehensive metabolomics data pre-processing, statistical analysis and interpretation. W4M is a collaborative portal that provides tools enabling advanced workflows for Mass Spectrometry…

PiMP
Web
Desktop

PiMP Polyomics integrated Metabolomics Pipeline

Allows users to analyze and visualize liquid chromatography – mass…

Allows users to analyze and visualize liquid chromatography – mass spectrometry (LC-MS) data. PiMP is a comprehensive and integrated web enabled pipeline that consists of five tasks: (1) project…

Informed-Proteo…
Desktop

Informed-Proteomics

Allows top-down data analysis. Informed-Proteomics is composed of a liquid…

Allows top-down data analysis. Informed-Proteomics is composed of a liquid chromatography mass spectrometry (LC-MS) feature-finding algorithm, a database-search algorithm, and an interactive results…

CIDentify
Desktop

CIDentify Collision-Induced Dissociation identify

Helps to identify unknown peptides by mass spectrometry (MS). CIDentify is a…

Helps to identify unknown peptides by mass spectrometry (MS). CIDentify is a homology-based database search algorithm constructed from the source code for a FASTA homology-based database search…

Most popular analytical software

MPA
Desktop

MPA MetaProteomeAnalyzer

An intuitive open-source tool for metaproteomics data analysis and…

An intuitive open-source tool for metaproteomics data analysis and interpretation, which includes multiple search engines and the feature to decrease data redundancy by grouping protein hits to…

Unipept
Web

Unipept

An open source web application that is designed for metaproteomics analysis…

An open source web application that is designed for metaproteomics analysis with a focus on interactive data-visualization. Unipept is underpinned by a fast index built from UniProtKB and the NCBI…

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

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