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Mass spectrometry software tools

Mass spectrometry applications

Most recent bioinformatics tools

Mascot…
Desktop

Mascot Percolator

Interfaces Mascot with Percolator. Mascot Percolator is an extension that works…

Interfaces Mascot with Percolator. Mascot Percolator is an extension that works in 3 steps: (i) reads the Mascot results files, (ii) computes the scoring features and uses these for the Percolator…

DecoyPYrat
Desktop

DecoyPYrat

Allows quick generation of decoy databases for both separate and concatenated…

Allows quick generation of decoy databases for both separate and concatenated searches. DecoyPyrat is an efficient open source application that significantly reduces the inaccuracy in decoy…

MS-FINDER
Desktop

MS-FINDER

Facilitates formula predictions and isomer structure selections from tandem…

Facilitates formula predictions and isomer structure selections from tandem mass spectrometry (MS/MS). MS-FINDER allows spectra elucidation of chemical structures from accurate mass precursor ions…

Seven Golden…
Desktop

Seven Golden Rules

Automatically excludes wrong molecular formulas. Seven Golden Rules consists in…

Automatically excludes wrong molecular formulas. Seven Golden Rules consists in (1) applying heuristic restrictions for number of elements during formula generation, (2) performing LEWIS and SENIOR…

Most popular analytical software

MPA
Desktop

MPA MetaProteomeAnalyzer

An intuitive open-source tool for metaproteomics data analysis and…

An intuitive open-source tool for metaproteomics data analysis and interpretation, which includes multiple search engines and the feature to decrease data redundancy by grouping protein hits to…

Unipept
Web

Unipept

An open source web application that is designed for metaproteomics analysis…

An open source web application that is designed for metaproteomics analysis with a focus on interactive data-visualization. Unipept is underpinned by a fast index built from UniProtKB and the NCBI…

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

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