Mass spectrometry software tools

Mass spectrometry applications

Most recent bioinformatics tools

UC2 search
Server
Desktop

UC2 search

Provides high-throughput prediction of elemental compositions from accurate…

Provides high-throughput prediction of elemental compositions from accurate mass values detected by high-resolution mass spectrometers. UC2 is a search system for databases constructed using…

MiapeGeIDB
Dataset

MiapeGeIDB

Provides a web-based interface for supporting authors to publish their gel…

Provides a web-based interface for supporting authors to publish their gel electrophoresis experiments according to MIAPE guidelines. MiapeGElDB also performs syntax checks and provides a repository…

RAMM
Desktop

RAMM RNAModMapper

Allows interpretation of collisional-induced dissociation (CID) data from…

Allows interpretation of collisional-induced dissociation (CID) data from oligonucleotides. RAMM can map interpreted tandem mass spectrometry (MS/MS) sequences onto RNA sequences. It enables higher…

mSpecs Editor
Desktop

mSpecs Editor

Allows management and edition of mass spectral libraries in the field of…

Allows management and edition of mass spectral libraries in the field of metabolomics. mSpecs Editor provides capabilities for the automatic management and calculation of libraries though its…

Most popular analytical software

MPA
Desktop

MPA MetaProteomeAnalyzer

An intuitive open-source tool for metaproteomics data analysis and…

An intuitive open-source tool for metaproteomics data analysis and interpretation, which includes multiple search engines and the feature to decrease data redundancy by grouping protein hits to…

Unipept
Web

Unipept

An open source web application that is designed for metaproteomics analysis…

An open source web application that is designed for metaproteomics analysis with a focus on interactive data-visualization. Unipept is underpinned by a fast index built from UniProtKB and the NCBI…

Xlink Analyzer
Desktop

Xlink Analyzer

A software tool for visualization and analysis of cross-linking mass…

A software tool for visualization and analysis of cross-linking mass spectrometry (XL-MS) data in the context of the three-dimensional structures. Xlink Analyzer enables automatic visualization of…

Metriculator
Desktop

Metriculator

A software tool designed to facilitate long-term storage of extensive…

A software tool designed to facilitate long-term storage of extensive performance metrics. Metriculator features a web interface that generates interactive comparison plots for contextual…

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