Mass spectrometry imaging | Bioimaging software tools
Mass Spectrometric Imaging (MSI) is a molecular imaging technique that allows the generation of 2D ion density maps for a large complement of the active molecules present in cells and sectioned tissues. Automatic segmentation of such maps according to patterns of co-expression…
LA-iMageS
Desktop

LA-iMageS

Generates 2D/3D images for the elements present in a set from inductively…

Generates 2D/3D images for the elements present in a set from inductively coupled plasma-mass spectrometry (ICP/MS) spectra. LA-iMageS is a fast and automatic generation of high-quality elemental…

flexImaging
Desktop

flexImaging

Provides an easy-to-use tool for two-dimensional peptide and protein imaging of…

Provides an easy-to-use tool for two-dimensional peptide and protein imaging of cells or tissue extracts. flexImaging provides comprehensive visualization of the spatial distribution of biomarker…

Quantinetix
Desktop

Quantinetix

Provides quantitation of target compounds (taking into account biological…

Provides quantitation of target compounds (taking into account biological matrix effect) following Mass spectrometry imaging experiments. Quantinetix is a Quantitative Imaging Mass Spectrometry…

Multimaging
Desktop

Multimaging

Revolutionizes the analysis of Mass Spectrometry Imaging data with a limitless…

Revolutionizes the analysis of Mass Spectrometry Imaging data with a limitless software which helps to visualize, normalize, validate and interpret large MSI data. Multimaging integrates the latest…

MSIdV
Desktop

MSIdV

A visualization tool for biological indices calculated from mass spectrometry…

A visualization tool for biological indices calculated from mass spectrometry imaging data, which can effectively scan a series of mass spectra and process, calculate and visualize user-defined index…

MSI.R
Desktop

MSI.R

A collection of R scripts for the efficient evaluation of .imzML archives in a…

A collection of R scripts for the efficient evaluation of .imzML archives in a four-step strategy: (1) calculation of the density distribution of mass-to-charge ratio (m/z) signals in the .imzML file…

EXIMS
Desktop

EXIMS EXploring Imaging Mass Spectrometry data

Presents an improved data analysis pipeline based on a new peak picking method…

Presents an improved data analysis pipeline based on a new peak picking method for exploring imaging mass spectrometry data. EXIMS consists of five consecutive main steps: where the first step…

Cardinal
Desktop

Cardinal

A mass spectrometry imaging toolbox for statistical analysis. Cardinal is an R…

A mass spectrometry imaging toolbox for statistical analysis. Cardinal is an R package that implements statistical and computational tools for analyzing mass spectrometry imaging datasets, including…

AMASS
Desktop

AMASS

A series of tools written in C++ that allows you to segment your mass…

A series of tools written in C++ that allows you to segment your mass spectrometry imaging dataset into regions with similar molecular signatures. The software allows for user input at each step of…

BioMap
Desktop

BioMap

Provides a common visualization and storage platform, which can be used for…

Provides a common visualization and storage platform, which can be used for visualization of data from any source, provided that an import filter exists for this format. This platform can be extended…

MMSIT
Desktop

MMSIT MALDI MS Imaging Tool

A custom designed software for automated imaging of samples on an Applied…

A custom designed software for automated imaging of samples on an Applied Biosystems Voyager instrument. Key features of the software are: 1) Comprehensive sample database (MS Access) which is easy…

MSImageViewer
Desktop

MSImageViewer

The original purpose of this software was the conversion of data acquired with…

The original purpose of this software was the conversion of data acquired with the FlashQuant (MALDI version of ABSciex 4000) into MS images.

OpenMSI
Web

OpenMSI

MSI has emerged as a technique suited to resolving metabolism within complex…

MSI has emerged as a technique suited to resolving metabolism within complex cellular systems; where understanding the spatial variation of metabolism is vital for making a transformative impact on…

OpenMZxy
Desktop

OpenMZxy

Enables automatic and manual sampling, as well as the recording of position…

Enables automatic and manual sampling, as well as the recording of position data. OpenMXxy can be used for the development of custom automated sampling and imaging applications.

TissueView
Desktop

TissueView

A solution for processing and displaying data from mass spectrometry imaging…

A solution for processing and displaying data from mass spectrometry imaging (MSI) experiments. The user-friendly design rapidly displays the spatial location and intensity of proteins and…

ImageQuest
Desktop

ImageQuest

Enables the visualization of imaging data, creating two-dimensional and…

Enables the visualization of imaging data, creating two-dimensional and three-dimensional maps of analyzed tissue for the optimal display of data. ImageQuest software offers pathologists and…

MSiReader
Desktop

MSiReader

A vendor-neutral interface built on the Matlab platform designed to view and…

A vendor-neutral interface built on the Matlab platform designed to view and perform data analysis of Mass Spectrometry Imaging (MSI) data. A standalone version of MSiReader for which Matlab is not…

MALDIVision
Desktop

MALDIVision

A comprehensive bioinformatics tool for MALDI tissue imaging, facilitates data…

A comprehensive bioinformatics tool for MALDI tissue imaging, facilitates data processing, visualization and analysis of spatial distribution of individual ions across the sampled locations on a…

omniSpect
Desktop
Web

omniSpect

An open source web- and MATLAB-based software tool for both DESI and MALDI mass…

An open source web- and MATLAB-based software tool for both DESI and MALDI mass spectrometry imaging (MSI) that performs computationally intensive functions on a remote server. These functions…

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