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Mass spectrometry imaging software tools | Bioimaging

Mass Spectrometric Imaging (MSI) is a molecular imaging technique that allows the generation of 2D ion density maps for a large complement of the active molecules present in cells and sectioned tissues. Automatic segmentation of such maps according to patterns of co-expression…

Mass spectrometry imaging steps

Image pre-processing

Image processing

Image analysis

Most recent bioinformatics tools

Deep_Learning_f…
Desktop

Deep_Learning_for_Tumor_Classification_in_IMS

Classifies tumors in imaging mass spectrometry (IMS).…

Classifies tumors in imaging mass spectrometry (IMS). Deep_Learning_for_Tumor_Classification_in_IMS is based on a deep neural network method. It starts by pre-processing data and handles separately…

rMSI
Desktop

rMSI

Provides an efficient way to manage mass spectrometry imaging (MSI) data…

Provides an efficient way to manage mass spectrometry imaging (MSI) data together with a graphical user interface (GUI) integrated in R environment. rMSI is designed for simple and effective data…

LA-iMageS
Desktop

LA-iMageS

Generates 2D/3D images for the elements present in a set from inductively…

Generates 2D/3D images for the elements present in a set from inductively coupled plasma-mass spectrometry (ICP/MS) spectra. LA-iMageS is a fast and automatic generation of high-quality elemental…

Quantinetix
Desktop

Quantinetix

Provides quantitation of target compounds (taking into account biological…

Provides quantitation of target compounds (taking into account biological matrix effect) following Mass spectrometry imaging experiments. Quantinetix is a Quantitative Imaging Mass Spectrometry…

Most popular analytical software

Quantinetix
Desktop

Quantinetix

Provides quantitation of target compounds (taking into account biological…

Provides quantitation of target compounds (taking into account biological matrix effect) following Mass spectrometry imaging experiments. Quantinetix is a Quantitative Imaging Mass Spectrometry…

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