Mass spectrometry imaging software tools | Bioimaging

Mass Spectrometric Imaging (MSI) is a molecular imaging technique that allows the generation of 2D ion density maps for a large complement of the active molecules present in cells and sectioned tissues. Automatic segmentation of such maps according to patterns of co-expression of individual molecules can be used for discovery of novel molecular signatures (molecules that are specifically expressed in particular spatial regions).

Source text:
(Bruand et al., 2011) AMASS: algorithm for MSI analysis by semi-supervised segmentation. J Proteome Res.

Image preprocessing

Image processing

Structural analysis

Image data management and annotation