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Protocols

MassIVE specifications

Information


Unique identifier OMICS_15362
Name MassIVE
Alternative name Mass spectrometry Interactive Virtual Environment
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Version 1.3.0
Maintained Yes

Documentation


Maintainer


  • person_outline MassIVE Team

MassIVE citations

 (5)
call_split

Development and Characterization of an Endotoxemia Model in Zebra Fish

2018
Front Immunol
PMCID: 5884884
PMID: 29651289
DOI: 10.3389/fimmu.2018.00607
call_split See protocol

[…] ap and pathway analyses. The pathway analysis was conducted with MetaCore™ version 6.30 build 68,780, and the selected genes were mapped to the Homo sapiens pathways. Proteomic data were deposited to Mass Spectrometry Interactive Virtual Environment (MassIVE) at UCSD. MassIVE ID: MSV000081612 (ftp://MSV000081612@massive.ucsd.edu provisory Username: MSV000081612 Password: hsualan2017; these data wi […]

library_books

Membrane Proteomics Analysis of the Candida glabrata Response to 5 Flucytosine: Unveiling the Role and Regulation of the Drug Efflux Transporters CgFlr1 and CgFlr2

2016
Front Microbiol
PMCID: 5174090
PMID: 28066366
DOI: 10.3389/fmicb.2016.02045

[…] stress agents, the membrane proteome of C. glabrata cells exposed to flucytosine-induced stress was compared to that of unstressed cells. Details on the protein quantification can be assessed at the Mass spectrometry Interactive Virtual Environment (MassIVE) repository (https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp; MassIVE ID: MSV000079209). Annotated spectra for single peptide identifi […]

library_books

Comparative Proteomic Analysis of Desulfotomaculum reducens MI 1: Insights into the Metabolic Versatility of a Gram Positive Sulfate and Metal Reducing Bacterium

2016
Front Microbiol
PMCID: 4759654
PMID: 26925055
DOI: 10.3389/fmicb.2016.00191

[…] ted at 8 days. This data was excluded from the analysis as the 6-day samples matched closer with the growth phase of the other conditions. All raw data is deposited and publicly available in MassIVE (Mass spectrometry Interactive Virtual Environment) with accession number MSV000079501 and ProteomeXchange with accession number PXD003605. […]

library_books

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

2015
Proteomics
PMCID: 4409848
PMID: 25158685
DOI: 10.1002/pmic.201400302

[…] roteome Machine Database (GPMDB) [], PeptideAtlas [], and the PRIDE database []. Additionally, at present there are other resources (many of them recently developed) such as ProteomicsDB [], MassIVE (Mass Spectrometry Interactive Virtual Environment), Chorus, MaxQB [], PASSEL (PeptideAtlas SRM Experiment Library) [], MOPED (Model Organism Protein Expression Database) [], PaxDb [], Human Proteinped […]

library_books

Wavelet Based Peak Detection and a New Charge Inference Procedure for MS/MS Implemented in ProteoWizard’s msConvert

2014
J Proteome Res
PMCID: 4324452
PMID: 25411686
DOI: 10.1021/pr500886y

[…] AB SCIEX Triple TOF 5600 quadupole time-of-flight (QqTOF), Agilent 6530/6550 QqTOF, Thermo Scientific Q-Exactive, and Waters Synapt G2/G2-S QqTOF. All raw data sets are publicly available through the mass spectrometry interactive virtual environment (MassIVE) at http://massive.ucsd.edu/ProteoSAFe. Please note that in many cases these data sets were collected solely for software evaluation purposes […]

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