MassSieve statistics

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MassSieve specifications

Information


Unique identifier OMICS_09162
Name MassSieve
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Douglas J. Slotta <>

Publication for MassSieve

MassSieve in publications

 (4)
PMCID: 5821407
PMID: 29466423
DOI: 10.1371/journal.pone.0193250

[…] were searched using omssa with precursor mass tolerance settings of +/- 20 ppm, product ions mass tolerance of +/- 1.5 da, and fragment settings of +/- 0.5 da []. xml output files were parsed using masssieve (nih). a minimum peptide length of 6 amino acids was used for protein matches. proteins were required to have 2 or more unique peptides with e-value scores of 0.01 or less. relative […]

PMCID: 5644706
PMID: 29049729
DOI: 10.1167/iovs.16-20336

[…] cluster compute instances using the proteome cluster interface (https://www.proteomecluster.com, in the public domain). xml output files were parsed and nonredundant protein sets determined using masssieve (https://www.ncbi.nlm.nih.gov/staff/slottad/masssieve, in the public domain). proteins were required to have two or more unique peptides across the analyzed samples with e value scores […]

PMCID: 4169610
PMID: 25317274
DOI: 10.3402/jev.v3.24858

[…] peptides with ion scores below their identity scores were rejected. mass sieve was used to calculate percentage coverage for each protein identification (http://www.ncbi.nlm.nih.gov/staff/slottad/masssieve). peptide identifications from 1 representative experiment are shown., exosomes were prepared from pre-purified cm derived from non-apoptotic rab27b-expressing mcf-7 cells using 4 methods: […]

PMCID: 4059263
PMID: 24792918
DOI: 10.1021/pr500194t

[…] a statistically significant peptide-spectrum match (psm) score. finally, identified peptides are transformed into a list of identified proteins through protein assembly tools such as idpicker, masssieve, or proteinprophet, among others., although this strategy has been successful, there are several critical challenges that cannot be fully addressed by simply improving database searching […]


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MassSieve institution(s)
Laboratory of Neurotoxicology, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA

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