MassTRIX statistics

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Citations per year

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Popular tool citations

chevron_left Metabolic network analysis Metabolite mapping Data integration chevron_right
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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

MassTRIX specifications


Unique identifier OMICS_07520
Name MassTRIX
Interface Web user interface
Restrictions to use None
Input data A peak list or annotated genes/compounds
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Brigitte Waegele <>

Publications for MassTRIX

MassTRIX in pipeline

PMCID: 4728800
PMID: 26813401
DOI: 10.1186/s13059-016-0881-8

[…] data has been used to identify pathways that are regulated at both the gene expression and the metabolite level, and tools are available that visualize results within the pathway context (masstrix [], paintomics [], vanted v2 [], and steinernet [])., integration of more than two genomic data types is still at its infancy and not yet extensively applied to functional sequencing […]

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MassTRIX in publications

PMCID: 5749025
PMID: 29291722
DOI: 10.1186/s12859-017-2006-0

[…] were chosen for similarity analysis. this selection was formed by 3omics [], biocyc/humancyc [], consensuspathdb, impala [], ingenuity® pathway analysis (ipa®, qiagen, redwood city, ca), kegg [], masstrix [], mbrole [], metaboanalyst, metabox [], metacore™ (thomson reuters inc., carlsbad, ca), metamapp [], metexplore, metscape [], mpea [], paintomics [], papi [], pathvisio [], reactome [], […]

PMCID: 5646248
PMID: 29042495
DOI: 10.1128/mBio.01343-17

[…] [ft-icr-ms]) to analyze metabolites in the same fecal samples (n = 45). metabolites were extracted with methanol and analyzed by ft-icr-ms. data filtering and metabolite assignment using the masstrix () web server revealed 5,552 features, the majority (62%, 3,416 features) of which were unknown but assigned to molecular formulas using netcalc (). thirty-eight percent (2,136 features) […]

PMCID: 5504741
PMID: 28693422
DOI: 10.1186/s12870-017-1062-y

[…] sucrose, which has the largest number of edges in the correlation network and is part of the c3 community, only one of the masses yielded potential matches to known metabolites from kegg via the masstrix platform [], namely m/z 333.0592 in community c4, which represents heat-related response. interestingly, m/z 333.0592 was assigned to be a putative glycerophosphoinositol (gropins; […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] interpretation of results, such as metabolome searcher [], a web-based application to directly search genome-constructed metabolic databases, which includes metacyc with data on plant metabolism. masstrix [] is a web interface that takes a mass peak list from hrms as input and matches it against a kyoto encyclopedia of genes and genomes (kegg) compounds database, returning a pathway map […]

PMCID: 5306141
PMID: 28261225
DOI: 10.3389/fpls.2017.00101

[…] obtained by kegg, hmdb and lipidmaps databases queries. the metabolic pathways associated to selected masses were obtained by kegg query with vitis vinifera (vvi) as organism using the web server masstrix. network analysis was performed from the complete sample set data as previously described (). nodes represent m/z values (metabolite candidates) and edges represent chemical reactions., […]

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MassTRIX institution(s)
Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany; Department of Biology, University of Munich (LMU), Germany; Institute of Ecological Chemistry, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Neuherberg, Germany

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