MassWiz statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MassWiz
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Tool usage distribution map

This map represents all the scientific publications referring to MassWiz per scientific context
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Associated diseases

This word cloud represents MassWiz usage per disease context
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Popular tool citations

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Protocols

MassWiz specifications

Information


Unique identifier OMICS_27838
Name MassWiz
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data A spectra.
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Version 1.7.3.0
Stability Stable
Maintained Yes

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Maintainer


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Publication for MassWiz

MassWiz citations

 (3)
library_books

Dispec: A Novel Peptide Scoring Algorithm Based on Peptide Matching Discriminability

2013
PLoS One
PMCID: 3652849
PMID: 23675420
DOI: 10.1371/journal.pone.0062724

[…] In some algorithms, e.g. pNovo, MassWiz and DeltAMT , , , the m/z error between the experimental peaks and the theoretical peaks was considered when calculating similarity score. Some studies , showed that the m/z error distributio […]

call_split

Learning from Decoys to Improve the Sensitivity and Specificity of Proteomics Database Search Results

2012
PLoS One
PMCID: 3506577
PMID: 23189209
DOI: 10.1371/journal.pone.0050651
call_split See protocol

[…] aken from 18 protein mixture Seattle Proteome Center (http://regis-web.systemsbiology.net/PublicDatasets). ISB standard mix as described in Klimek et al. was downloaded and searched as described in MassWiz article. MzXML files from the Mix 3 dataset were converted to mascot generic format (mgf) using mzXML2Search program. The mgf files for each instrument type were collated into a single mgf fil […]

library_books

A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery

2011
PLoS One
PMCID: 3168506
PMID: 21931718
DOI: 10.1371/journal.pone.0024442

[…] ow for high specificity peptide identification from plasma was developed (). In this workflow, separate target-decoy searches were conducted in four different algorithms- Sequest, X!Tandem, OMSSA and MassWiz. A stringent FDR of <1% was applied. The objective of such an effort was to characterize plasma proteins with high confidence, keeping false positives to a bare minimum. Use of multiple algori […]


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MassWiz institution(s)
Institute of Genomics and Integrative Biology (CSIR), Delhi, India
MassWiz funding source(s)
Supported by CSIR SRF grant and CSIR network project on Plasma Proteomics - Health, Environment and Disease (NWP-04).

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