MASSyPup protocols

View MASSyPup computational protocol

MASSyPup statistics

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MASSyPup specifications

Information


Unique identifier OMICS_02483
Name MASSyPup
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for MASSyPup

MASSyPup in pipeline

2016
PMCID: 5138414
PMID: 27999583
DOI: 10.3389/fpls.2016.01817

[…] to mzml file format using proteowizard (kessner et al., ). the sum spectra were visualized in toppview (sturm et al., ), a gaussian noise filter (5 da width) was applied to smooth the signals. massypup64 and esiprot were used as data processing platforms (winkler, , )., for the determination or the oligomeric state of attpis (wild-type and mutants), analytical size-exclusion chromatography […]


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MASSyPup in publications

 (3)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] a collection of data processing algorithms, a visualization framework, and metabolite annotation functions, while the plug-in for knime allows easy integration with other statistical workflows. massypup [] does not actually integrate different procedures, but it does provide an easy platform for accessing many different tools in the form of a linux distribution that can be run directly […]

PMCID: 4553411
PMID: 26379694
DOI: 10.3389/fpls.2015.00670

[…] in this analysis both possible options, omssa version 2.1.9 win32 () and x!tandem version 13.2.1.1 ()., we re-processed the mass spectrometry data with the trans-proteomic pipeline 4.8.0 () on massypup (). raw files and results were deposited to the proteomexchange consortium () via the pride partner repository. the data may be accessed with the login [email protected] and password […]

PMCID: 4444734
PMID: 26074932
DOI: 10.3389/fpls.2015.00365

[…] were performed using spidermass (winkler, ). the spidermass meta-db for arabidopsis is provided as supplemental data . mass spectrometry data processing was performed on the analysis platform massypup (winkler, )., consensus features, hq features and putative metabolite identifications with their compound classes were integrated into a sqlite (https://sqlite.org/) database, […]


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MASSyPup institution(s)
Department of Biotechnology and Biochemistry, CINVESTAV Unidad Irapuato, Irapuato, Mexico

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