MassyTools specifications

Information


Unique identifier OMICS_10590
Name MassyTools
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
License Apache License version 2.0
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Manfred Wuhrer <>

Publication for MassyTools

MassyTools in publications

 (12)
PMCID: 5939987
PMID: 29553863
DOI: 10.1080/19420862.2018.1433974

[…] (fucose); l = α2,3-linked (lactonized) n-acetylneuraminic acid; e = α2,6-linked (ethyl esterified) n-acetylneuraminic acid), and these compositions were integrated from all spectra making use of massytools version 1.0.0. extracted glycans areas within a spectrum were normalized to the total sum of areas, which was further used for repeatability and derived trait calculation. figures […]

PMCID: 5772620
PMID: 29343697
DOI: 10.1038/s41598-018-19147-x

[…] processed for quality control and relative quantitation of analytes. the raw spectra were exported from flexanalysis 3.4 (build 76; bruker daltonics) as text files (x,y), and further processed by massytools (version 0.1.8.0). first, internal calibration was performed based on a predefined list of 5 analytes (peaks 2, 3, 5, 9, 18 in supporting information table ). mass spectra presenting […]

PMCID: 5766648
PMID: 29359131
DOI: 10.3389/fmed.2017.00241

[…] two averages, 98 signals were manually assigned to putatively originate from glycan compositions. using flexanalysis 3.4 (bruker daltonics), the spectra were transformed into text format (x, y). massytools (version 0.1.7.1 beta) was used to perform calibration and integration of the text files (). specifically, calibration was performed with a high precision calibration list, requiring […]

PMCID: 5709460
PMID: 29192278
DOI: 10.1038/s41598-017-16811-6

[…] calibration (see supplemental table ) and targeted data extraction of individual mass spectra was achieved with our in-house software developed for automated data processing, massytools version 0.1.8.0. spectrum as well as analyte quality was assessed using several quality parameters calculated within the software. finally, the intensities of revised analytes […]

PMCID: 5509673
PMID: 28706253
DOI: 10.1038/s41598-017-05641-1

[…] consisting of protein purification, glycan release, sialic acid derivatization, solid phase extraction, matrix-assisted laser desorption/ionization - mass spectrometry (maldi-ms) analysis and massytools data processing. epo purification from ccs by anti-epo antibody coupled sepharose beads yielded excellent purity with acceptable recovery and was free of glycoform bias. glycosylation […]


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MassyTools institution(s)
Center for Proteomics and Metabolomics, Leiden University Medical Center, RC Leiden, Netherlands

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