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Mat-aCGH

An application toolbox for analysis and visualization of microarray-comparative genomic hybridization (array-CGH or aCGH) data which is based on Matlab. Full process of aCGH analysis, from denoising of the raw data to the visualization of the desired results, can be obtained via Mat-aCGH straight-forwardly. The main advantage of this toolbox is that it is collection of recent well-known statistical and information theoretic methods and algorithms for analyzing aCGH data. More importantly, the proposed toolbox is developed for multisample analysis which is one of the current challenges in this area. Mat-aCGH is convenient to apply for any format of data, robust against diverse noise and provides the users with valuable information in the form of diagrams and metrics. Therefore, it eliminates the needs of another software or package for multisample aCGH analysis.

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Mat-aCGH classification

Mat-aCGH specifications

Software type:
Toolkit/Suite
Restrictions to use:
None
Programming languages:
MATLAB
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Maintained:
Yes

Mat-aCGH distribution

versioning

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Mat-aCGH support

Maintainer

  • Hossein Sharifi Noghabi <>

Credits

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Publications

Institution(s)

Faculty of Technology, Policy and Management, Delft University of Technology, Netherlands; Department of Computer Engineering, Faculty of Engineering, Ferdowsi University of Mashhad, Mashhad, Iran

Link to literature

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