MATAM specifications

Information


Unique identifier OMICS_18533
Name MATAM
Alternative name Mapping-Assisted Targeted-Assembly for Metagenomics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of shotgun metagenomics short reads and a reference database containing the largest possible set of sequences from a given target marker gene.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.2.0
Stability Stable
Source code URL https://codeload.github.com/bonsai-team/matam/tar.gz/v1.2.0
Maintained Yes

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Publication for Mapping-Assisted Targeted-Assembly for Metagenomics

MATAM institution(s)
CRIStAL UMR CNRS 9189, Université Lille 1, Villeneuve d’Ascq, France; Inria Lille Nord-Europe, Villeneuve d’Ascq, France

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