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MATAM specifications


Unique identifier OMICS_18533
Alternative name Mapping-Assisted Targeted-Assembly for Metagenomics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A set of shotgun metagenomics short reads and a reference database containing the largest possible set of sequences from a given target marker gene.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python
License GNU Affero General Public License version 3
Computer skills Advanced
Version 1.2.0
Stability Stable
Source code URL
Maintained Yes



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Publication for Mapping-Assisted Targeted-Assembly for Metagenomics

MATAM in publications

PMCID: 5853095
PMID: 29544479
DOI: 10.1186/s12941-018-0261-1

[…] falciparum, p. malariae and p. ovale are known to circulate []. low values of parasitaemia prevalence are concentrated in the northern senegal, particularly in the region of saint-louis, louga and matam. malaria risk increases in some areas of central senegal and reaches the highest values in the southern (kolda, tambacounda and kedougou) [, ]. in the west centre, the parasite prevalence […]

PMCID: 5815196
PMID: 29448965
DOI: 10.1186/s40249-018-0393-8

[…] on the atlantic ocean, conakry is surrounded by bays and estuaries with a large part situated on a peninsula extending into the ocean. the city is divided into the municipalities of kaloum, dixinn, matam, matoto, and ratoma, which are further divided into districts. kaloum, dixinn, and matam are situated on the peninsula and ratoma and matoto connect the peninsula to the mainland. conakry […]

PMCID: 5640937
PMID: 29029619
DOI: 10.1186/s12936-017-2055-x

[…] reactive active case detection, in which all passively detected cases are investigated and household members tested for malaria, have been introduced in the northern regions of st. louis, louga, and matam, covering the northern third of the country. given the population movement of nomadic pastoralists between zones of high and low transmission, there was concern that these populations may play […]

PMCID: 5664620
PMID: 28946705
DOI: 10.3390/ijerph14101119

[…] for the period 2001–2010. this malaria data is recorded for all health districts and hospitals to derive monthly time series for 11 main stations (dakar, diourbel, fatick, kaolack, kolda, louga, matam, saint-louis, tambacounda, thies, and ziguinchor). the selection of these sentinel sites provides a good representation of malaria transmission in the different climatic zones of senegal […]

PMCID: 5625386
PMID: 28747371
DOI: 10.1128/JCM.00962-17

[…] following voluntary or provider-initiated htc service programs in six public health care clinics and hospitals in sub-saharan africa between august 2011 and january 2015: the centre communautaire matam in conakry, guinea; madi opei clinic and kitgum matidi clinic in kitgum, uganda; homa bay district hospital in homa bay, kenya; arua district hospital in arua, uganda; nylon hospital in doula, […]

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MATAM institution(s)
CRIStAL UMR CNRS 9189, Université Lille 1, Villeneuve d’Ascq, France; Inria Lille Nord-Europe, Villeneuve d’Ascq, France

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