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MATCHCLIP | Locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads

A method that identifies the breakpoints of a CNV using both the positions and CIGAR strings of the reads that cover breakpoints of a CNV. In case the two break points of a CNV are in repeated regions and the break points are not unique, MATCHCLIPS reports the range where the break points can slide.

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MATCHCLIP forum

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MATCHCLIP classification

MATCHCLIP specifications

Unique identifier:
OMICS_02289
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable

MATCHCLIP distribution

versioning

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No versioning.

MATCHCLIP support

Documentation

Maintainer

  • Hongzhe Li <>

Credits

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Publications

Institution(s)

Department of Biostatistics and Epidemiology, University of Pennsylvania Perelman School of Medicine Philadelphia, PA, USA

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