MATCHER specifications

Information


Unique identifier OMICS_19797
Name MATCHER
Alternative name Manifold Alignment To CHaracterize Experimental Relationships
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jan Prins

Publication for Manifold Alignment To CHaracterize Experimental Relationships

MATCHER citation

library_books

Single Cell Computational Strategies for Lineage Reconstruction in Tissue Systems

2018
PMCID: 5924749
PMID: 29713661
DOI: 10.1016/j.jcmgh.2018.01.023

[…] nisms of maturation or over branch points to show mechanisms of cell-fate decisions in which a cell must choose between 2 or more unique differentiation routes. Manifold alignment algorithms, such as Manifold Alignment to CHaracterize Experimental Relationships, facilitate integrated comparisons between different trajectories (different routes/different data types depicting the same route, and so […]

MATCHER institution(s)
Department of Computer Science, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Curriculum in Bioinformatics and Computational Biology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Computer Science, Duke University, Durham, NC, USA
MATCHER funding source(s)
Supported by National Institutes of Health (NIH) (HG06272) and NIH BD2K Fellowship (T32 CA201159) and NIH F31 Fellowship (HG008912) and by NIH grants U01 HG007900-01 and R01 GM118551-01.

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