Matchprot specifications


Unique identifier OMICS_03666
Name Matchprot
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for Matchprot

Matchprot citation


Projections for fast protein structure retrieval

BMC Bioinformatics
PMCID: 1764482
PMID: 17254310
DOI: 10.1186/1471-2105-7-S5-S5
call_split See protocol

[…] pposed to the typical ones which take 4 residues, 2 from each structure (e.g. Dali [] and CE []). Such a similarity function can be used to design very fast algorithms, and is the key to the speed of Matchprot.The above formulation works perfectly when there are no extra residues (indels) in the two proteins. However, if there are a large number of indels between the structures, the projections of […]

Matchprot institution(s)
Department of Computer Science and Automation, Indian Institute of Science, Bangalore, India; Bioinformatics Center, Indian Institute of Science, Bangalore, India
Matchprot funding source(s)
This tool is supported by Ministry of Human Resource Development, Government of India (grant number F26-11/ 2004).

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