MatCol specifications

Information


Unique identifier OMICS_32891
Name MatCol
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Version 0.96
Stability Stable
Source code URL https://www.cmri.org.au/bioinformatics/downloads/MatCol0.96.zip
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Matloob Khushi

Publication for MatCol

MatCol citation

library_books

MatCol: a tool to measure fluorescence signal colocalisation in biological systems

2017
Sci Rep
PMCID: 5566543
PMID: 28827650
DOI: 10.1038/s41598-017-08786-1

[…] s.MatCol is a specialised tool and, unlike ImageJ or CellProfiler, it was designed to produce reproducible measurements and increase the speed at which object-based colocalisations can be quantified. MatCol reports colocalisations as the number of objects found to overlap between two channels. This number could be saved in a database which could allow machine learning of large scale analysis among […]

MatCol institution(s)
Bioinformatics Unit, Children’s Medical Research Institute, The University of Sydney, Westmead, NSW, Australia; Cancer Research Unit, Children’s Medical Research Institute, The University of Sydney, Westmead, NSW, Australia; Gene Therapy Unit, Children’s Medical Research Institute, The University of Sydney, Westmead, NSW, Australia
MatCol funding source(s)
Supported by National Health and Medical Research Council of Australia grant GNT1088646; by Kids Cancer Alliance (KCA), grant 1062240, which was awarded through the Priority-driven Collaborative Cancer Research Scheme and by Cure Cancer Australia with the support of Cancer Australia.

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