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MatCont specifications

Information


Unique identifier OMICS_21418
Name MatCont
Alternative name Numerical Bifurcation Analysis Toolbox in Matlab
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
License Public Domain
Computer skills Advanced
Version 6.6
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Willy Govaerts

Publication for Numerical Bifurcation Analysis Toolbox in Matlab

MatCont citations

 (75)
library_books

Bifurcation analysis of two coupled Jansen Rit neural mass models

2018
PLoS One
PMCID: 5870965
PMID: 29584728
DOI: 10.1371/journal.pone.0192842

[…] a hyperbolic equilibrium (saddle node) to itself. There is no general method to find and identify a limit cycle; however, it is possible to compute it using the continuation procedure provided in the MATCONT package []. In order to check if the bifurcation is saddle-node homoclinic, the period of oscillation versus the bifurcation parameters is usually plotted (it is depicted for case I with conne […]

library_books

Dynamical Mechanism of Hyperpolarization Activated Non specific Cation Current Induced Resonance and Spike Timing Precision in a Neuronal Model

2018
PMCID: 5852126
PMID: 29568262
DOI: 10.3389/fncel.2018.00062

[…] clinic orbit bifurcation (SNHO), which is a switch point between the Hom and SNIC bifurcations, are also considered in the present paper.Bifurcation diagrams are obtained using the dynamical software Matcont (Dhooge et al., ) and XPPAUT (Ermentrout, ). […]

library_books

Use of transcriptomic data for extending a model of the AppA/PpsR system in Rhodobacter sphaeroides

2017
BMC Syst Biol
PMCID: 5747161
PMID: 29284486
DOI: 10.1186/s12918-017-0489-y

[…] All computational work has been done using MATLAB [] and MATLAB toolboxes: (i) MATCONT [] and (ii) Curve Fitting Tool Box. […]

library_books

Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF β1 activation model

2017
BMC Syst Biol
PMCID: 5763301
PMID: 29322934
DOI: 10.1186/s12918-017-0508-z

[…] Bifurcation analysis was performed using MATCONT (https://sourceforge.net/projects/matcont/). Equilibrium continuation function was called to generate the bifurcation curves in Fig. and Fig. . […]

library_books

Trade off and flexibility in the dynamic regulation of the cullin RING ubiquitin ligase repertoire

2017
PLoS Comput Biol
PMCID: 5711038
PMID: 29149173
DOI: 10.1371/journal.pcbi.1005869

[…] The simulations depicted in were done using MatCont []. The transient simulations involving substrate degradation depicted in Figs and – were done using the SimBiology Toolbox of MATLAB []. Derivations of the analytical formulas in Eqs – can b […]

library_books

Distinguishing mechanisms underlying EMT tristability

2017
PMCID: 5876698
PMID: 29623961
DOI: 10.1186/s41236-017-0005-8

[…] scading bistable switches (CBS) model can be found in the Additional file : Section 1&2.Deterministic analysis Deterministic analysisThe bifurcation diagrams of the EMT circuits are calculated by the Matcont package in Matlab. The temporal dynamics of the EMT circuits are calculated by the ode15s solver in Matlab.(2)Stochastic simulation Stochastic simulationFor the single-cell simulation, a Lange […]


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MatCont institution(s)
Department Informatietechnologie, Katholieke Hogeschool SintLieven, Gent, Belgium; Department of Applied Mathematics and Computer Science, Ghent University, Gent, Belgium; Department of Mathematics, Utrecht University, Utrecht, Netherlands; Department of Electrical Engineering, Mathematics and Computer Science, Twente Universtity, Enschede, Netherlands

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