MatDefine specifications


Unique identifier OMICS_26748
Name MatDefine
Interface Web user interface
Restrictions to use License purchase required
Input data A sequence or a matrix.
Input format EMBL,GenBank,FASTA,IG
Output data A protocol detailing each step of the matrix generation, and the weight matrix.
Computer skills Basic
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes


  • person_outline GGA Team

Additional information

MatDefine is part of GEMS Launcher, which is part of Genomatix Software Suite.

MatDefine citation


Identification of Multiple Hypoxia Signatures in Neuroblastoma Cell Lines by l1 l2 Regularization and Data Reduction

PMCID: 2905945
PMID: 20652058
DOI: 10.1155/2010/878709

[…] ite and generated a dataset containing the promoters of the genes coding for the mRNAs spotted on the chip. The HRE matrix has been obtained from 69 experimental validated human HRE sequences [] with MatDefine tool (Genomatix Software GmbH). HRE consensus elements [(G|C|A|T) (C|G|T|A) (G|C|A|T) (T|G|C|A) (A|G) (CGTG) (C|G|T|A) (G|C|A|T) (G|C|T|A) (C|G|T|A)] were searched in the promoter sequences […]

MatDefine institution(s)
Intrexon Bioinformatics Germany GmbH, Munich, Germany

MatDefine reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MatDefine