MatDefine specifications

Information


Unique identifier OMICS_26748
Name MatDefine
Interface Web user interface
Restrictions to use License purchase required
Input data A sequence or a matrix.
Input format EMBL,GenBank,FASTA,IG
Output data A protocol detailing each step of the matrix generation, and the weight matrix.
Computer skills Basic
Stability Stable
Free trial Yes
Registration required Yes
Maintained Yes

Maintainer


  • person_outline GGA Team

Additional information


MatDefine is part of GEMS Launcher, which is part of Genomatix Software Suite. http://www.genomatix.de/online_help/help_matinspector/matind_help.html

MatDefine citation

library_books

Identification of Multiple Hypoxia Signatures in Neuroblastoma Cell Lines by l1 l2 Regularization and Data Reduction

2010
PMCID: 2905945
PMID: 20652058
DOI: 10.1155/2010/878709

[…] ite and generated a dataset containing the promoters of the genes coding for the mRNAs spotted on the chip. The HRE matrix has been obtained from 69 experimental validated human HRE sequences [] with MatDefine tool (Genomatix Software GmbH). HRE consensus elements [(G|C|A|T) (C|G|T|A) (G|C|A|T) (T|G|C|A) (A|G) (CGTG) (C|G|T|A) (G|C|A|T) (G|C|T|A) (C|G|T|A)] were searched in the promoter sequences […]

MatDefine institution(s)
Intrexon Bioinformatics Germany GmbH, Munich, Germany

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