Mathematical modeling and computer simulation software tools | Systems biology

Behaviours of complex biomolecular systems are often irreducible to the elementary properties of their individual components. Explanatory and predictive mathematical models are therefore useful for fully understanding and precisely engineering cellular functions. The development…

Mathematical modeling steps

Most recent bioinformatics tools

Snoopy
Desktop

Snoopy

Allows to design and animate hierarchical graphs, among others Petri nets.…

Allows to design and animate hierarchical graphs, among others Petri nets. Snoopy is a hybrid simulator that supports state-of-the-art hybrid simulation approaches. It is deployed as a component of…

Holmes
Desktop

Holmes

Supports systems biologists in the process of creation and analysis models of…

Supports systems biologists in the process of creation and analysis models of biological systems. More particularly, Holmes allows to create, simulate and analyze models based on various types of…

SIOOR
Desktop

SIOOR Structural Identifiability-based Optimal Observation Remedy

Quantifies unknown model parameters of biological networks. SIOOR strategy…

Quantifies unknown model parameters of biological networks. SIOOR strategy allows users to identify a minimum number of unobserved nodes, for which the associated node variables should be observed in…

VisId
Desktop

VisId

Characterizes high-order relationships among parameters and allows…

Characterizes high-order relationships among parameters and allows visualisation of the results. VisId is the implementation of an identifiability and visualization methodology as a MATLAB toolbox.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.