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Mathematical modeling and computer simulation software tools | Systems biology

Behaviours of complex biomolecular systems are often irreducible to the elementary properties of their individual components. Explanatory and predictive mathematical models are therefore useful for fully understanding and precisely engineering cellular functions. The development…

Mathematical modeling steps

Most recent bioinformatics tools

CellPD
Desktop

CellPD Cell Phenotype Digitizer

Provides a platform dedicated to the analysis, quantification, and sharing of…

Provides a platform dedicated to the analysis, quantification, and sharing of phenotypic data. CellPD is a standalone software intended for both data quality control and a quantitative description…

FEBiO
Desktop

FEBiO Finite Elements for Biomechanics

Offers a nonlinear finite element solver for biomechanical applications. FEBiO…

Offers a nonlinear finite element solver for biomechanical applications. FEBiO provides modeling scenarios, constitutive models and boundary conditions. The application supplies algorithms to model…

Repast-HPC
Desktop

Repast-HPC Repast for High Performance Computing

Generates agent-based models and simulation. Repast-HPC is an open source…

Generates agent-based models and simulation. Repast-HPC is an open source platform supplying a command-line interface and developed for large computing clusters. It allows users to perform…

Repast Simphony
Desktop

Repast Simphony

Allows users to generate agent-based models and simulations. Repast Simphony is…

Allows users to generate agent-based models and simulations. Repast Simphony is an open source platform providing a graphic user interface developed for small computing clusters application. The…

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