Mathematical modeling and computer simulation software tools | Systems biology

Behaviours of complex biomolecular systems are often irreducible to the elementary properties of their individual components. Explanatory and predictive mathematical models are therefore useful for fully understanding and precisely engineering cellular functions. The development…

Mathematical modeling steps

Most recent bioinformatics tools

SELANSI
Desktop

SELANSI SEmi-LAgrangian SImulation of GRNs

Approximates the chemical master equation (CME) by the partial integral…

Approximates the chemical master equation (CME) by the partial integral differential equation (PIDE) model. SELANSI is a toolbox for simulation of stochastic multidimensional gene regulatory…

AgentBase
Desktop

AgentBase

Allows users to build Agent Based Models (ABMs). AgentBase is a software…

Allows users to build Agent Based Models (ABMs). AgentBase is a software library optimized for quick development of illustrative ABM models. It values minimalism over complexity, readable and pretty…

MeaBench
Desktop

MeaBench

Permits acquisition of multi-electrode data and online analysis. MeaBench can…

Permits acquisition of multi-electrode data and online analysis. MeaBench can communicate in real-time with stimulator hardware. It can be applied in closed-loop stimulation experiments. This tool…

Spike Manager
Desktop

Spike Manager

Analyzes multi-channel signals obtained from multi-site electrophysiological…

Analyzes multi-channel signals obtained from multi-site electrophysiological recordings of neuronal population. Spike Manager is able to produce a detailed statistical analysis of the…

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