MATLAB specifications


Unique identifier OMICS_18874
Software type Application/Script, Pipeline/Workflow
Interface Command line interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes


  • Image Processing Toolkit


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MATLAB in publications

PMCID: 5805764
PMID: 29422614
DOI: 10.1038/s41598-018-20898-w

[…] contrast to the use of cross-sectional images taken out of the potting showing fibers as white cylinders (fig. –left panel)., the non-coagulated fibers (i.e. black dots) were counted using the fiji image processing toolkit of imagej analysis software, (imagej 1.51 h, nih, bethesda, usa), an open-source platform for biological-image analysis (fig. ). to ameliorate selection and count […]

PMCID: 5759373
PMID: 29313842
DOI: 10.1038/sdata.2017.197

[…] using the automorph package focus. focus facilitates batch processing in zerene stacker (, a third-party focus stacking software, or imagej, an open source image processing toolkit. focus retains individual image z-stacks for downstream use in 3d data extraction using run3dmorph,, another automorph module., edf images for each object were then processed […]

PMCID: 5425909
DOI: 10.1186/s12919-017-0071-z

[…] . platelet behaviour is captured via real time digital-microscopy. only platelets that interact with the vwf coated surface are captured by the imaging software. the image is then processed by matlab image processing toolkit., results: platelets from the patient cohort adhered more stably to the vwf surface (p = 0.02) and travelled significantly less prior to arresting on the vwf surface (p ≤ 0.0 […]

PMCID: 5332158
PMID: 28139976
DOI: 10.7554/eLife.20340.032

[…] third, our devices can multiplex up to six distinct genotypes into a single experiment and monitor multi-color fluorescent signals throughput the replicative lifespan. fourth, we provide both an image processing toolkit and a statistical framework for analyzing the datasets obtained via our device. although we drew inspiration from the cartoon illustration in wang et al., both the images […]

PMCID: 5091895
PMID: 27806056
DOI: 10.1371/journal.pone.0163788

[…] and a 1mm scale bar was incorporated into each digital image. images were cropped and landmarks positioned with the aid of a custom-designed graphical user interface, coded in matlab 2012b using the image processing toolkit. twelve landmark positions were selected, based on previous literature of insects [–] and specifically aedes [, ] wing morphometry. procrustes superimposition was optimized […]

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