MATLIGN statistics

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Associated diseases

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MATLIGN specifications

Information


Unique identifier OMICS_19154
Name MATLIGN
Interface Web user interface
Restrictions to use None
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Maintained No

Maintainers


This tool is not available anymore.

Information


Unique identifier OMICS_19154
Name MATLIGN
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
studio, stdlib, string, vector, cmath, iostream, fstream, utility, cassert, config.
Maintained No

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Publication for MATLIGN

MATLIGN in publication

PMCID: 3142252
PMID: 21668950
DOI: 10.1186/1745-6150-6-30

[…] for potential functional motifs, we compared them to known transcription factor binding sites. we aligned the oligomers against all binding sites in jaspar core database (version 3.0) [] using matlign [] with the euclidean distance scoring function. repeatmasker tables at the ucsc genome browser (hg18) were utilized to map the coordinates of transposable elements into the genomic region […]


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MATLIGN institution(s)
Institute of Biotechnology, University of Helsinki, Helsinki, Finland; EMBL-European Bioinformatics Institute, Hinxton, UK

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