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Number of citations per year for the bioinformatics software tool MaturePred
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MaturePred specifications

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Unique identifier OMICS_07984
Name MaturePred
Interface Web user interface
Restrictions to use None
Input data miRNA sequence(s)
Input format FASTA
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for MaturePred

MaturePred citations

 (4)
library_books

A glance at subgenomic flavivirus RNAs and microRNAs in flavivirus infections

2016
Virol J
PMCID: 4884392
PMID: 27233361
DOI: 10.1186/s12985-016-0541-3

[…] hese results with the ncRNA feature extraction and pre-miRNA classification web tool, validating the secondary structure of the pre-miRNAs using Mfold and, at last, identifying mature miRNAs with the MaturePred tool. Applying this methodology to the DENV-2 genome (GenBank accession numbers: JF357906.1 and FJ390389.1), they were able to identify eight putative miRNAs, all derived from the negative […]

library_books

MatPred: Computational Identification of Mature MicroRNAs within Novel Pre MicroRNAs

2015
Biomed Res Int
PMCID: 4670854
PMID: 26682221
DOI: 10.1155/2015/546763

[…] nformation specific to individual nucleotide. Microprocessor uses a support vector machine (SVM) [] classifier to identify Drosha cleavage sites based on 686 sequence- and structure-related features. MaturePred [] finds mature miRNAs by integrating the structure-based free energy, and other features extracted from miRNA:miRNA∗ duplexes, based on a SVM model for plants. Similarly, another approach, […]

library_books

Computational Identification of Dengue Virus MicroRNA Like Structures and their Cellular Targets

2014
Bioinform Biol Insights
PMCID: 4149395
PMID: 25210446
DOI: 10.4137/BBI.S13649

[…] er a pseudo-pre-miRNA-like hairpin or a real pre-miRNA using a Support Vector Machine classifier (SVM).With the purpose of extracting mature miRNA:miRNA* duplexes from pre-miRNA hairpins, we used the MaturePred Web Tool (accessible at http://nclab.hit.edu.cn/maturepred/). This software also uses a model based on SVM that predicts the starting position of an miRNA by performing discriminant analysi […]

library_books

Computational methods for ab initio detection of microRNAs

2012
Front Genet
PMCID: 3467617
PMID: 23087705
DOI: 10.3389/fgene.2012.00209

[…] explored.Many programs have been developed for the detection of pre-miRNAs, however, only few of them are able to find the mature miRNA sequence within the hairpin (; ).Huang and colleagues developed MaturePred which uses two-stage sample selection to predict the mature miRNAs for plants and animals () based on a number of features which they compared between known miRNA:miRNA⋆ duplexes and pseudo […]


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MaturePred institution(s)
Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin, China

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