MaturePred specifications

Information


Unique identifier OMICS_07984
Name MaturePred
Interface Web user interface
Restrictions to use None
Input data miRNA sequence(s)
Input format FASTA
Computer skills Basic
Stability Stable
Maintained No

Maintainer


This tool is not available anymore.

Publication for MaturePred

MaturePred in publications

 (5)
PMCID: 4884392
PMID: 27233361
DOI: 10.1186/s12985-016-0541-3

[…] results with the ncrna feature extraction and pre-mirna classification web tool, validating the secondary structure of the pre-mirnas using mfold and, at last, identifying mature mirnas with the maturepred tool. applying this methodology to the denv-2 genome (genbank accession numbers: jf357906.1 and fj390389.1), they were able to identify eight putative mirnas, all derived from the negative […]

PMCID: 4867574
PMID: 27181057
DOI: 10.1038/srep25941

[…] should be also considered as imbalance class distribution. several computational methods which have been developed for mature mirnas classification include maturebyes, mirmat, mirrim2, mirdup, maturepred, mirpara, mirexplorer, matpred and mirduplexsvm. these methods mainly focus on the use of machine learning techniques, and their lower predictive performance suffers […]

PMCID: 4149395
PMID: 25210446
DOI: 10.4137/BBI.S13649

[…] a pseudo-pre-mirna-like hairpin or a real pre-mirna using a support vector machine classifier (svm)., with the purpose of extracting mature mirna:mirna* duplexes from pre-mirna hairpins, we used the maturepred web tool (accessible at http://nclab.hit.edu.cn/maturepred/). this software also uses a model based on svm that predicts the starting position of an mirna by performing discriminant […]

PMCID: 3835848
PMID: 24302881
DOI: 10.1155/2013/924153

[…] where these genes were not reported. pcr-based approach (see above) revealed mir390-like locuses in both species (figures and ). these sequences were validated as mir390 precursor genes by maturepred web server (http://nclab.hit.edu.cn/maturepred/) and secondary structure prediction at rnafold web server (http://rna.tbi.univie.ac.at/cgi-bin/rnafold.cgi). these potential liverwort […]

PMCID: 3467617
PMID: 23087705
DOI: 10.3389/fgene.2012.00209

[…] many programs have been developed for the detection of pre-mirnas, however, only few of them are able to find the mature mirna sequence within the hairpin (; )., huang and colleagues developed maturepred which uses two-stage sample selection to predict the mature mirnas for plants and animals () based on a number of features which they compared between known mirna:mirna⋆ duplexes […]


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MaturePred institution(s)
Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin, China

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