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Citations per year

Number of citations per year for the bioinformatics software tool maxdBrowse
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maxdBrowse specifications

Information


Unique identifier OMICS_26924
Name maxdBrowse
Interface Web user interface
Restrictions to use None
Programming languages Java
License Perl artistic
Computer skills Basic
Maintained Yes

Maintainers


  • person_outline David Hancock
  • person_outline Michael Wilson
  • person_outline Giles Velarde
  • person_outline Norman Morrison
  • person_outline Andrew Hayes

Information


Unique identifier OMICS_26924
Name maxdBrowse
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Database management system MySQL
License Perl artistic
Computer skills Advanced
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline David Hancock
  • person_outline Michael Wilson
  • person_outline Giles Velarde
  • person_outline Norman Morrison
  • person_outline Andrew Hayes

Publication for maxdBrowse

maxdBrowse citations

 (2)
library_books

A reproducible approach to high throughput biological data acquisition and integration

2015
PeerJ
PMCID: 4493686
PMID: 26157642
DOI: 10.7717/peerj.791

[…] rforming a comparable process using Taverna () required 8 total main steps: (1) downloading gene expression data from GEO, (2) loading and accessing gene expression data (maxd software: maxdLoad2 and maxdBrowse ()), (3) attaching (curated) metadata (maxdLoad2), (4) normalizing and pre-processing the raw data (Taverna/Biomoby/runPreprocessing and AffyArrayNormalization () or RShell ()), (5) identif […]

library_books

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially expressed genes from microarray data

2008
BMC Bioinformatics
PMCID: 2528018
PMID: 18687127
DOI: 10.1186/1471-2105-9-334

[…] sis services in conjunction with R were demonstrated in the example workflow (Fig. ). Data analysed by R were provided by the maxdLoad2 microarray database using its web service interface provided by maxdBrowse and the results of this were further analysed by the GOTermFinder tool.The current work on analysing quantitative data extends that by Stevens and coworkers who investigated the implementat […]


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maxdBrowse institution(s)
School of Computer Science, The University of Manchester, Manchester, UK; School of Chemistry, The University of Manchester, Manchester, UK; Faculty of Life Sciences, The University of Manchester, Manchester, UK; NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, UK
maxdBrowse funding source(s)
Supported by the NERC Environmental Bioinformatics Centre (NEBC), and maxdBrowse by the Biotechnology and Biological Sciences Research Council Investigating Gene Function Initiative.

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