MaxEntScan pipeline

MaxEntScan specifications

Information


Unique identifier OMICS_09611
Name MaxEntScan
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Single/multiple sequences
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Yeo Gene <>

Information


Unique identifier OMICS_09611
Name MaxEntScan
Interface Web user interface
Restrictions to use None
Input data Single/multiple sequences
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Yeo Gene <>

Publication for MaxEntScan

MaxEntScan IN pipeline

2016
PMCID: 5366069
PMID: 27884935
DOI: 10.1136/jmedgenet-2016-104215

[…] variant was given a custom deleterious score based on a six-point scale,27 calculated using output from annovar.28 variants predicted to affect splicing were assigned a deleterious score based on maxentscan score differences,29 and the relationship of variants present in known disease-causing genes analysed for pathogenicity using clinvar.30 variants with minor allele frequency (maf) >1% […]

MaxEntScan institution(s)
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain and Cognitive Sciences, Center for Biological and Computational Learning, Massachusetts Institute of Technology, Cambridge, MA, USA

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