MUMdex specifications

Information


Unique identifier OMICS_12976
Name MUMdex
Alternative name Maximal Unique Matchdex
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data DNA sequences
Input format GZ of FASTA, GZ of TXT (SAM, FASTQ)
Output data A compact binary representation of a mapped sequencing dataset to find interesting mutations.
Output format MUMdex, BAM
Operating system Unix/Linux, Mac OS
Programming languages C++, Python
Computer skills Advanced
Version 0.7
Stability Stable
Requirements C++ compiler, Numpy
Maintained Yes

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Maintainer


  • person_outline Peter Andrews <>

MUMdex article

MUMdex institution(s)
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; New York Genome Center, New York, NY, USA
MUMdex funding source(s)
This work was supported by grants from the Breast Cancer Research Foundation and from the Simons Foundation Autism Research Initiative (SF235988).

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