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Maximum Clique Algorithm specifications

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Unique identifier OMICS_24926
Name Maximum Clique Algorithm
Alternative name MaxCliqueDyn
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Source code URL https://gitlab.com/janezkonc/mcqd
Maintained Yes

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  • person_outline Dusanka Janezic

Publication for Maximum Clique Algorithm

Maximum Clique Algorithm citations

 (9)
library_books

Modular Bayesian Networks with Low Power Wearable Sensors for Recognizing Eating Activities

2017
PMCID: 5751632
PMID: 29232937
DOI: 10.3390/s17122877

[…] BN to O(k3nk+wn2+(wrwrw)n); by limiting k to 2 and minimizing the w, where n is the number of nodes, k is the maximum number of parents, r is the maximum number of values for each node, and w is the maximum clique. Algorithm 1. Learning algorithm for the CPT.for∀D,// D is the input data increment numOfData by 1; C :=class of D;for i=1 to n(I) do if C includes Ii then     increment num(Ii) by 1;   […]

library_books

A review of parameters and heuristics for guiding metabolic pathfinding

2017
J Cheminform
PMCID: 5602787
PMID: 29086092
DOI: 10.1186/s13321-017-0239-6

[…] ructure between the graph representations of two compounds, was used for building the KEGG RPAIR database utilized by many pathfinding algorithms (Fig. a). SIMCOMP uses a variant of the Bron-Kerbosch maximum clique algorithm [] to identify the maximum common substructure of two compounds.Fig. 3 Unlike chemical fingerprints, where a pre-determined set of chemical characteristics are used to compare […]

library_books

Ligand based virtual screening interface between PyMOL and LiSiCA

2016
J Cheminform
PMCID: 5013575
PMID: 27606012
DOI: 10.1186/s13321-016-0157-z

[…] l-molecule databases with immediate subsequent visualization of predicted ligands. The developed plugin represents an interface between PyMOL and LiSiCA, an LBVS software based on a graph theoretical maximum clique algorithm (http://insilab.org/maxclique) [, ]. The main purpose of this interface is to enable visualization of large amounts of data returned from LiSiCA’s output within the preferred […]

library_books

Modeling enzyme ligand binding in drug discovery

2015
J Cheminform
PMCID: 4594084
PMID: 26457119
DOI: 10.1186/s13321-015-0096-0

[…] ased drug design.Based on the idea that proteins with similar local binding sites perform similar function, an algorithm ProBiS and its corresponding web server [, ] was developed. ProBiS uses a fast maximum clique algorithm [] to compare a query protein to members of a database of 3D protein structures and detects with sub-residue precision structurally similar binding sites as patterns of physio […]

library_books

Structure Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison

2013
PLoS Comput Biol
PMCID: 3828134
PMID: 24244144
DOI: 10.1371/journal.pcbi.1003341

[…] respective of sequence or fold similarity of proteins –. The algorithm, ProBiS (Protein Binding Sites) compares protein binding sites represented as protein graphs in a pairwise fashion using a fast maximum clique algorithm on protein product graphs, and finds sets of residues that are physicochemically and geometrically related. Querying a target binding site, or target protein structure, again […]

library_books

The taming of an impossible child: a standardized all in approach to the phylogeny of Hymenoptera using public database sequences

2011
BMC Biol
PMCID: 3173391
PMID: 21851592
DOI: 10.1186/1741-7007-9-55

[…] species in which the sequences of all species overlap in at least 100 nucleotide or amino acid positions [IX]. This was done with the aid of the script minimum_sequence_overlap. The script applies a maximum clique algorithm. Generally, a maximum clique search is a way to find the largest group of items that fulfill a certain pairwise criterion. (See Additional file for a short introduction to ma […]


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Maximum Clique Algorithm institution(s)
National Institute of Chemistry, Ljubljana, Slovenia
Maximum Clique Algorithm funding source(s)
Supported by grants P1-0002 of the Ministry of Higher Education, Science, and Technology of Slovenia.

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