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Popular tool citations

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Associated diseases

Associated diseases

MaxLink specifications

Information


Unique identifier OMICS_07800
Name MaxLink
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Versioning


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Maintainer


  • person_outline Dimitri Guala <>

Information


Unique identifier OMICS_07800
Name MaxLink
Interface Web user interface
Restrictions to use None
Programming languages C++
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainer


  • person_outline Dimitri Guala <>

MaxLink in publications

 (4)
PMCID: 5399445
PMID: 28429739
DOI: 10.1038/srep46598

[…] set of appropriate performance measures to compare state-of-the-art gene prioritization algorithms: three based on network diffusion, netrank and two implementations of random walk with restart, and maxlink that utilizes network neighborhood. our benchmark suite provides a systematic and objective way to compare the multitude of available and future gene prioritization tools, enabling […]

PMCID: 5333103
PMID: 28252032
DOI: 10.1038/srep43258

[…] typically predict candidate disease genes by measuring their network characteristics (correlation, connectivity, distance, etc.) to known disease genes from different perspectives, such as pinta, maxlink and genefriends., in this study, we presented a novel network analysis-based method named genepanda (gene prioritizing approach using network distance analysis) for prioritizing candidate […]

PMCID: 4290587
PMID: 25521637
DOI: 10.1186/1471-2164-15-S9-S1

[…] for utilization of biological networks for improvement of identification (coverage) have been described, including analysis of overlaps, clique enrichment analysis, proteomics expansion pipeline, maxlink, and shortest-path methods (reviewed in []). the improvement of inconsistencies between different runs can be pursued using overlap analysis, direct group analysis, and network-based analysis […]

PMCID: 3805323
PMID: 23557376
DOI: 10.1021/pr301127f

[…] we compare the recovery performance and functional insights from three distinct instances of ppin-based approaches, viz., proteomics expansion pipeline (pep), functional class scoring (fcs), and maxlink, in a test scenario of valproic acid (vpa)-treated mice. we find that the most comprehensive functional insights, as well as best non-detected protein recovery performance, are derived […]


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MaxLink institution(s)
Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden

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