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MaxOcc specifications

Information


Unique identifier OMICS_20008
Name MaxOcc
Alternative name Maximum Occurrence
Restrictions to use None
Input data NMR data and SAXS profiles.
Computer skills Basic
Maintained Yes

Maintainers


  • person_outline Claudio Luchinat <>
  • person_outline Ivano Bertini <>

Publication for Maximum Occurrence

MaxOcc in publications

 (2)
PMCID: 5553349
PMID: 28501583
DOI: 10.1016/j.abb.2017.05.005

[…] an interesting extension of the ensemble approach combining saxs and nmr data from pseudocontact shifts (pcs), paramagnetic relaxation enhancements (pres) and residual dipolar couplings (rdcs) is maximum occurrence analysis (mo) , . in this approach the conformational heterogeneity of two-domain proteins is assessed through the estimation of a mo parameter for each conformation in an ensemble […]

PMCID: 1539018
PMID: 16542450
DOI: 10.1186/1471-2164-7-55

[…] example motifs tabulated. the meme program was run a beowulf cluster using options "-dna -mod oops -nmotifs 3 -text -p52 -maxsize 1000000". improbizer runs used options "nummotifs = 3 background = l maxocc = l" and for additional control runs the "controlrun = on" parameter was set. motif sequence information was gathered from all three programs via perl script and used to make sequence logo [] […]


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MaxOcc institution(s)
Magnetic Resonance Center (CERM), University of Florence, Sesto Fiorentino, Italy; Department of Chemistry, University of Florence, Sesto Fiorentino, Italy; EMBL, Hamburg Outstation, Hamburg, Germany
MaxOcc funding source(s)
Supported by MIUR-FIRB contracts RBLA032ZM7, RBRN07BMCT, and by the European Commission, contracts Bio-NMR n. 261863, East-NMR n. 228461, Biomedbridges n. 284209 and We-NMR 261572; and by the national GRID Initiatives of Belgium, Italy, Germany, the Netherlands (via the Dutch BiG Grid project), Portugal, the United Kingdom, South Africa, Taiwan and the Latin America GRID infrastructure via the Gisela project.

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