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MaxSub specifications

Information


Unique identifier OMICS_11942
Name MaxSub
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Siew Nom

Publication for MaxSub

MaxSub citations

 (68)
library_books

Molecular Cloning and Characterization of Carbonic Anhydrase XII from Pufferfish (Takifugu rubripes)

2018
Int J Mol Sci
PMCID: 5877703
PMID: 29534037
DOI: 10.3390/ijms19030842

[…] ic properties were validated with the ProQ, Verify3D, and ERRAT tools. The evaluation results for the CA XII model were as follows. ProQ, LGscore: 5.873 (value >4 implies an extremely good model) and MaxSub: 0.585 (values >0.5–<0.8 implies a very good model); Verify3D: 3D/1D profile score: 92.49%; ERRAT overall quality factor: 94%. These results confirmed that the predicted CA XII assigned favorab […]

library_books

Same but not alike: Structure, flexibility and energetics of domains in multi domain proteins are influenced by the presence of other domains

2018
PLoS Comput Biol
PMCID: 5825166
PMID: 29432415
DOI: 10.1371/journal.pcbi.1006008

[…] ferences in loop conformations. It is defined as the number of alpha carbons falling within a distance cut-off from the corresponding Cα of the other structure. MAXCLUSTER, an improved version of the maxsub algorithm [], with a cut-off of 4Å was used for calculation of GDT score. High GDT scores are indicative of a low structural deviation between the proteins.For studying structural variation at […]

library_books

Insights from the protein protein interaction network analysis of Mycobacterium tuberculosis toxin antitoxin systems

2017
Bioinformation
PMCID: 5712783
PMID: 29225431
DOI: 10.6026/97320630013380

[…] % for VapC10. Prosa web Z score for VapC9 and VapC10 was -4.07 and -3.64 respectively, thereby suggesting that the structures are of good quality (). Predicted resolution by resprox along with LG and Maxsub score determined by ProQ also indicated the reliability of 3D models. In addition, MOLPROBITY revealed that none of the residue possessed bad bonds or β deviations > 0.25A (). The 3D models gen […]

library_books

Biochemical efficacy, molecular docking and inhibitory effect of 2, 3 dimethylmaleic anhydride on insect acetylcholinesterase

2017
Sci Rep
PMCID: 5624869
PMID: 28970561
DOI: 10.1038/s41598-017-12932-0

[…] allowed regions (beige), and only 0.3% residues of modelled protein are within the disallowed regions (white). Protein quality predictor (ProQ server) indicated LGscore of “extremely good model” and MaxSub of “very good model” quality measures. Z-score for the predicted model is within the range of scores typically found for the native proteins of similar size (Supplementary Fig. ) while the plot […]

library_books

Sustained low peritoneal effluent CCL18 levels are associated with preservation of peritoneal membrane function in peritoneal dialysis

2017
PLoS One
PMCID: 5393879
PMID: 28414753
DOI: 10.1371/journal.pone.0175835

[…] nt levels over time on PD was associated with subsequent development of PMF. We defined two variables: 1) d1U CCL18 (the last CCL18 value in effluent minus the baseline level in each patient); and 2) Maxsub CCL18 (maximum CCL18 level in effluent during the follow-up minus the minimum CCL18 level measured in each patient). A Cox hazard analysis of these variables revealed that an increase in CCL18 […]

library_books

Identify High Quality Protein Structural Models by Enhanced K Means

2017
Biomed Res Int
PMCID: 5381204
PMID: 28421198
DOI: 10.1155/2017/7294519

[…] gh-throughput comparisons of protein models using different similarity measures (coordinate-based RMSD [cRMSD], distance-based RMSD [dRMSD], global distance test [GDT], total score [TS] [], TM-score, MaxSub [], and contact map overlap) to cluster the comparison results using standard methods, such as K-means clustering or hierarchical agglomerative clustering. The application was highly optimized […]


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MaxSub institution(s)
Department of Chemistry, Ben Gurion University, Beer-Sheva, Israel

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