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MaxSubTree specifications

Information


Unique identifier OMICS_13059
Name MaxSubTree
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Protein sequences, number of aligned sequences and aligned positions in the sequence file.
Input format FASTA
Output data 6 output files are created during the analysis, 3 gives the details of the calculation performed during the analysis (calculation outputs), and the 3 remaining files give the result of the analysis (coevolution analysis output).
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License CeCILL version 2.1
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Alessandra Carbone <>

Publication for MaxSubTree

MaxSubTree in publication

PMCID: 4815164
PMID: 27029549
DOI: 10.1186/s12859-016-0995-8

[…] distance of the maximal (xj, xi)-subtree to the root of the maximal xi-subtree. for the simulation studies, the find.interaction function of the r package randomforestsrc [] was used with the option maxsubtree. a matrix with normalized minimal depths for all pairs of variables of interest is returned. since we are interested in two-way interactions, we used the average of the minimal depths […]


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MaxSubTree institution(s)
Génomique Analytique, Université Pierre et Marie Curie, Paris, France; Génomique des Microorganismes, CNRS, Paris, France
MaxSubTree funding source(s)
This work was done with the financial support from the French MESR.

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