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Mayday specifications

Information


Unique identifier OMICS_00773
Name Mayday
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Version 2.14
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline André Hennig

Information


Unique identifier OMICS_00773
Name Mayday
Interface Web user interface
Restrictions to use None
License GNU Lesser General Public License version 3.0
Computer skills Basic
Version 2.14
Stability Stable
Maintained Yes

Maintainer


  • person_outline André Hennig

Publications for Mayday

Mayday citations

 (29)
library_books

Comparative Genomics of Non TNL Disease Resistance Genes from Six Plant Species

2017
Genes
PMCID: 5664099
PMID: 28973974
DOI: 10.3390/genes8100249

[…] was used in our analysis. Biological replicates in a given group of data were summarized as average values. The expression profiles were log-2 transformed and heatmaps were created using the program Mayday 2.30 []. […]

library_books

Dual transcriptome of the immediate neutrophil and Candida albicans interplay

2017
BMC Genomics
PMCID: 5585943
PMID: 28874114
DOI: 10.1186/s12864-017-4097-4

[…] he union set of all neutrophil DEGs, which comprise 318 genes, were also clustered by expression pattern (Additional file : Figure S3). Eight different clusters were identified by QT-Clustering using Mayday and most DEGs were assigned to cluster 8 containing genes with increasing expression from 15 min to 60 min (Additional file : Figure S3: cluster 8) []. In three clusters, we identified 36 of th […]

call_split

Histone/protein deacetylase 11 targeting promotes Foxp3+ Treg function

2017
Sci Rep
PMCID: 5561267
PMID: 28819166
DOI: 10.1038/s41598-017-09211-3
call_split See protocol

[…] anoDrop ND-1000 and Nanochip 2100 Bioanalyzer (Agilent Technologies). Microarray experiments were performed using whole-mouse-genome oligoarrays (Mouse430a, Affymetrix), and array data analyzed using MAYDAY 2.12 software. Array data were subjected to robust multiarray average (RMA) normalization and analyzed SAM (significance analysis of microarrays). Only data with a false discovery rate adjusted […]

call_split

Ubiquitin specific Protease 7 Inhibition Impairs Tip60 dependent Foxp3 + T regulatory Cell Function and Promotes Antitumor Immunity

2016
PMCID: 5264272
PMID: 27769803
DOI: 10.1016/j.ebiom.2016.10.018
call_split See protocol

[…] and quantity were analyzed by photometry (DU640; Beckman-Coulter). Microarray experiments were performed with whole-mouse-genome oligoarrays (Mouse430a 2.0; Affymetrix), and array data analyzed with MAYDAY 2.12 (). Array data were subjected to robust multiarray average normalization. Normalized data were used for calculating fold changes of genes that were increased or decreased in expression wit […]

call_split

CD11b+Ly6C++Ly6G Cells with Suppressive Activity Towards T Cells Accumulate in Lungs of Influenza a Virus Infected Mice

2015
PMCID: 4681352
PMID: 26716013
DOI: 10.1556/1886.2015.00038
call_split See protocol

[…] with default settings in PGS, on p-values according to the expression values of the samples across the conditions.The heat map of the z-scores of the log2 expression profiles were generated using the Mayday open source soft ware (http://www-ps.informatik.uni-tuebingen.de/mayday/wp/) []. Gene ontology enrichment analysis (GOEA) was calculated for up- and down-regulated differentially expressed gene […]

library_books

Characterization of the cork oak transcriptome dynamics during acorn development

2015
BMC Plant Biol
PMCID: 4479327
PMID: 26109289
DOI: 10.1186/s12870-015-0534-1

[…] . The reads of each transcript belonging to the same pathway were summed up. For each pathway, the number of reads in each stage was transformed in Z-scores, clustered, and plotted in a heatmap using Mayday []. Gene ontology terms and NCBI COGs (Clusters of Orthologous Groups of proteins) associated to each Arabidopsis gene were downloaded from TAIR (www.arabidopsis.org) and NCBI (ftp://ftp.ncbi.n […]

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Mayday institution(s)
Center for Bioinformatics Tübingen, University of Tübingen, Tübingen, Germany

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