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MC-Net specifications

Information


Unique identifier OMICS_10316
Name MC-Net
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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  • person_outline Changiz Eslahchi <>

Publication for MC-Net

MC-Net in publications

 (7)
PMCID: 4926139
PMID: 27338471
DOI: 10.3390/toxins8060172

[…] using this tool, the authors concluded that higher mcyb-to-phycocyanin ratios corresponded to higher mc cell quotas and that variations in the proportion of mc-producing genotypes could explain the mc net production in microcystis colonies of different sizes., during the same year, kurmayer and kutzenberger [] developed a taq nuclease assay that also targeted the phycocyanin locus and the mcyb […]

PMCID: 4892429
PMID: 27307781
DOI: 10.1016/j.hal.2016.01.004

[…] structure (see section 5.4). in a few studies, the measurement of toxin synthesis genotype abundance was not found to be a satisfactory method for use in monitoring programs in order to predict mc net production from green-pigmented planktothrix populations (e.g. ). particularly for mcs, these contrasting results may be caused by: (1) several cyanobacteria producing mcs frequently co-exist […]

PMCID: 4766695
PMID: 26911978
DOI: 10.1186/s12866-016-0639-1

[…] algae outbreaks in lakes and reservoirs. we aimed to explore and quantify mutation events occurring within the large mcy gene cluster (55 kbp) encoding microcystin (mc) biosynthesis that inactivate mc net production. for this purpose we developed a workflow to detect mutations in situ occurring anywhere within the large mcy gene cluster as amplified from one single filament of the red-pigmented […]

PMCID: 3899107
PMID: 24465823
DOI: 10.1371/journal.pone.0085980

[…] of cortical actin filaments in both hmc-1 cells and human lung mcs and increased cell rigidity of hmc-1 cells. collectively these data suggest that cadm1 is a key adhesion receptor, which regulates mc net adhesion, both directly through cadm1-dependent adhesion, and indirectly through the regulation of other adhesion receptors. the latter is likely to occur via docking of kit and polymerisation […]

PMCID: 3827215
PMID: 24265798
DOI: 10.1371/journal.pone.0080177

[…] over three decades support this hypothesis., the increase in the frequency of the mcya (dhb) deletion mutant during the 30 year observation period is of significance with regard to the overall mc net production of the population in lake z├╝rich. during the earlier survey on mcy mutant genotype abundance [], a total of 103-114 individual filaments of planktothrix were isolated […]


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MC-Net institution(s)
Faculty of Mathematics, Shahid Beheshti University, GC, Tehran, Iran; School of Computer Science, Institute for Studies in Theoretical Physics and Mathematics (IPM), Tehran, Iran
MC-Net funding source(s)
This work is supported in part by IPM (cs-1385-02).

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