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MC-Net specifications

Information


Unique identifier OMICS_10316
Name MC-Net
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Changiz Eslahchi

Publication for MC-Net

MC-Net citations

 (5)
library_books

Is qPCR a Reliable Indicator of Cyanotoxin Risk in Freshwater?

2016
Toxins
PMCID: 4926139
PMID: 27338471
DOI: 10.3390/toxins8060172

[…] n using this tool, the authors concluded that higher mcyB-to-phycocyanin ratios corresponded to higher MC cell quotas and that variations in the proportion of MC-producing genotypes could explain the MC net production in Microcystis colonies of different sizes.During the same year, Kurmayer and Kutzenberger [] developed a Taq nuclease assay that also targeted the phycocyanin locus and the mcyB gen […]

library_books

Role of toxic and bioactive secondary metabolites in colonization and bloom formation by filamentous cyanobacteria Planktothrix

2016
PMCID: 4892429
PMID: 27307781
DOI: 10.1016/j.hal.2016.01.004

[…] netic structure (see section 5.4). In a few studies, the measurement of toxin synthesis genotype abundance was not found to be a satisfactory method for use in monitoring programs in order to predict MC net production from green-pigmented Planktothrix populations (e.g. ). Particularly for MCs, these contrasting results may be caused by: (1) several cyanobacteria producing MCs frequently co-exist i […]

library_books

Genetic Variability of Microcystin Biosynthesis Genes in Planktothrix as Elucidated from Samples Preserved by Heat Desiccation during Three Decades

2013
PLoS One
PMCID: 3827215
PMID: 24265798
DOI: 10.1371/journal.pone.0080177

[…] tructure over three decades support this hypothesis.The increase in the frequency of the mcyA (Dhb) deletion mutant during the 30 year observation period is of significance with regard to the overall MC net production of the population in Lake Zürich. During the earlier survey on mcy mutant genotype abundance [], a total of 103-114 individual filaments of Planktothrix were isolated from a depth-in […]

library_books

Ligand Mobility Modulates Immunological Synapse Formation and T Cell Activation

2012
PLoS One
PMCID: 3284572
PMID: 22384241
DOI: 10.1371/journal.pone.0032398

[…] C movement was analyzed with MATLAB (MathWorks, Natick, MA), as previously described . MC track velocity was defined as the total distance traveled by a given MC, divided by its total track duration. MC net displacement was computed as the shortest distance between the position where a single MC first appeared and the position where that MC disappeared from tracking. […]

library_books

Seasonal Dynamics of Microcystis spp. and Their Toxigenicity as Assessed by qPCR in a Temperate Reservoir

2011
Mar Drugs
PMCID: 3210603
PMID: 22072994
DOI: 10.3390/md9101715

[…] oxin-producing genotypes in environmental water samples. Although some previous reports have showed a close relationship between the occurrence of certain toxic genotypes (containing toxin genes) and MC net production [], and that it is possible to infer MC concentrations from Microcystis cell numbers [], correlations between MC levels and toxic genotypes numbers are often difficult to obtain [,]. […]


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MC-Net institution(s)
Faculty of Mathematics, Shahid Beheshti University, GC, Tehran, Iran; School of Computer Science, Institute for Studies in Theoretical Physics and Mathematics (IPM), Tehran, Iran
MC-Net funding source(s)
This work is supported in part by IPM (cs-1385-02).

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