MCAST pipeline

MCAST specifications

Information


Unique identifier OMICS_08378
Name MCAST
Alternative name Motif Cluster Alignment and Search Tool
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data DNA/RNA motifs, DNA sequences
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Version 4.11.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline FIMO Team <>

Information


Unique identifier OMICS_08378
Name MCAST
Alternative name Motif Cluster Alignment and Search Tool
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data DNA/RNA motifs, DNA sequences
Programming languages C
Computer skills Basic
Version 4.11.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline FIMO Team <>

Publications for Motif Cluster Alignment and Search Tool

MCAST citation

2005
PMCID: 1291357

[…] of multiple transcription factor proteins include one developed for human skeletal muscle [5], a logistic regression analysis model for liver-specific transcription factors [6], cis-analyst [7], mcast [8], ahab [9], stubb [10], cluster buster [11], mscan [12], and emcmodule [13]. methods based on binding sites of single transcription factors have also been developed – score [14], fly […]

MCAST institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA; Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia; Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA

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