MCbiclust specifications

Information


Unique identifier OMICS_19679
Name MCbiclust
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A gene expression matrix.
Input format A ranked list of samples with each sample having an associated PC1 value along with the score of each gene’s relation.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.4.0
Stability Stable
Requirements
AnnotationDbi, stats, gplots, graphics, utils, testthat, BiocStyle, dplyr, ggplot2, BiocParallel, scales, rmarkdown, knitr, MASS, cluster, GO.db, org.Hs.eg.db, pander, R(>=3.4), devtools, GGally, WGCNA, GSVA, gProfileR
Maintained Yes

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Documentation


Maintainers


  • person_outline Gyorgy Szabadkai <>
  • person_outline Robert Bentham <>
  • person_outline Kevin Bryson <>

Publication for MCbiclust

MCbiclust institution(s)
Department of Cell and Developmental Biology, Consortium for Mitochondrial Research, University College London, London, UK; The Francis Crick Institute, London, UK; Department of Computer Sciences, University College London, London, UK; Department of Biomedical Sciences, University of Padua, Padua, Italy
MCbiclust funding source(s)
Suppoprted by University College London COMPLeX/British Heart Foundation Fund [SP/08/004]; Biochemical and Biophysical Research Council [BB/L020874/1]; Wellcome Trust [097815/Z/11/Z], UK; Association for Cancer Research (AIRC) [IG13447], Italy.

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